Input parameters:

  Query = AT2G16780.1 (Len=415)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G16780.1, Len=415):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADEGKEETGMGQVEEDFSVWKKNTPFLYDLLISHPLEWPSLTVHWVPSTPNPYVADSYFGVHKLILGTHTSGSAQDFLM 80  
WD40-rpts                                                                                      

Query       81 VADVVTPTPNAEPGIGGANQDPFIPKVEIRQRIRVDGEVNRARCMPQKPTLVGAKTSGCEVFLFDYAKHAAKSQTSECDP 160 
WD40-rpts           (___________________________WD 1___________________________)            (__

Query      161 DLRLVGHDKEGYGLSWSPFKEGYLLSGSQDQKICLWDVSATPQDKVLNAMFVYEGHESAIADVSWHMKNENLFGSAGEDG 240 
WD40-rpts      _______________WD 2_________________)(______________________WD 3________________

Query      241 RLVIWDTRTNQMQHQVKVHEREVNYLSFNPFNEWVLATASSDSTVALFDLRKLNAPLHVMSSHEGEVFQVEWDPNHETVL 320 
WD40-rpts      _____)   (_________________WD 4_________________)    (_________________WD 5_____

Query      321 ASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHGGHKAKISDFAWNKNEPWVIASVAEDNSLQVWQMAESIYRD 400 
WD40-rpts      ____________)                   (_________________WD 6_________________)        

Query      401 EEDAEDIKEDITQQS 415 
WD40-rpts                     

6 WD40-repeats found in QUERY=AT2G16780.1 (Len=415):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    86-145      2.79  230.08  0.04827       15.0%     50.19
  WD 2:  Seg  8   158-197      6.28  374.11  0.00057       35.0%     50.20
  WD 3:  Seg 12   198-246      6.77  394.52  0.00030       30.0%     52.81
  WD 4:  Seg 16   250-289      7.19  411.56  0.00018       25.0%     54.75
  WD 5:  Seg 20   294-333      7.42  421.27  0.00013       32.5%     52.35
  WD 6:  Seg 24   353-392      6.49  382.91  0.00043       22.5%     55.14

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   86-145    TP--------TPNAEPGIGGANQDPFIPKVEIRQRIRVDGEVNRARCMPQKP-T-LVGAKTSGCEVFLFD
   WD 2  158-197    -C--------DP-------------------DLRLVGHDKEGYGLSWSPFKEGY-L-LSGSQDQKICLWD
   WD 3  198-246    VSATPQDKVLNA-------------------MFVYEGHESAIADVSWHMKNE-N-LFGSAGEDGRLVIWD
   WD 4  250-289    -N--------QM-------------------QHQVKVHEREVNYLSFNPFNEWV-L-ATASSDSTVALFD
   WD 5  294-333    -N--------AP-------------------LHVMSSHEGEVFQVEWDPNHE-TVL-ASSGEDRRLMVWD
   WD 6  353-392    -P--------EL-------------------LFSHGGHKAKISDFAWNKNEPWV-I-ASVAEDNSLQVWQ

   WD40 Template    TG--------EC-------------------LRTLSGHTSGVTSVSFSPDGK-R-L-VSGSEDGTIKVWD