Input parameters:

  Query = AT2G19430.1 (Len=367)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G19430.1, Len=367):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYGDATNWNEDEYRESILKEREIETRTVFRTAWAPPARISNPDAFVVASSDGTLAFHSLNSLVSQSASFGYSKGQDVMVA 80  
WD40-rpts               (______________________WD 1_____________________)                     (

Query       81 EPERVVRAHEGPAYDVKFYGEDEDALLLSCGDDGRVRGWKWREFAESDVSLHLKENHLKPLLELINPQHKGPWGALSPMP 160 
WD40-rpts      __________________WD 2_________________)                            (___________

Query      161 EINAMSVDPQSGSVFTAAGDSCAYCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKCVKVIG 240 
WD40-rpts      ______WD 3________________)   (_________________WD 4________________)   (_______

Query      241 SQDKKSRLRVSSMALDGSESWLVCGQGKNLALWNLPASECVQTIPIPAHVQDVMFDEKQILTVGAEPLLRRFDLNGALLS 320 
WD40-rpts      ___________WD 5__________________)   (_______________WD 6_______________)  (____

Query      321 QIHCAPCSVFSISLHPAGVVAVGGYGGIVDVISQFGSHLCTFRSSSL 367 
WD40-rpts      ____________WD 7________________)              

7 WD40-repeats found in QUERY=AT2G19430.1 (Len=367):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    10-58       5.34  335.33  0.00188       25.0%     45.69
  WD 2:  Seg  8    80-120      8.06  447.51  5.8e-05       25.0%     55.67
  WD 3:  Seg 14   149-187      7.88  440.21  7.3e-05       12.5%     41.93
  WD 4:  Seg 17   191-229     10.17  534.60  3.9e-06       32.5%     53.68
  WD 5:  Seg 21   233-274      6.50  383.18  0.00043       20.0%     55.40
  WD 6:  Seg 25   278-313      5.38  337.02  0.00179       22.5%     55.84
  WD 7:  Seg 29   316-353      7.56  427.05  0.00011       27.5%     51.86

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-58     EDEYRESILKEREIETRT----VFRTAWAPPARISNPDAFVVASSDGTLAFHS
   WD 2   80-120    -AE----PERVVRAHEGP----AYDVKFYGEDE---DALLLSCGDDGRVRGWK
   WD 3  149-187    -HK----GPWGALSPMPE----INAMSVDPQSG-----SVFTAAGDSCAYCWD
   WD 4  191-229    -GK----IKMTFKGHSDY----LHTVVSRSSAS-----QILTGSEDGTARIWD
   WD 5  233-274    -GK----CVKVIGSQDKKSRLRVSSMALDGSES-----WLVCGQ-GKNLALWN
   WD 6  278-313    -SE----CVQTIPIPAH-----VQDVMF--DEK-----QILTVGAEPLLRRFD
   WD 7  316-353    -GA----LLSQIHCAPCS----VFSISLHPAGV-----VAVGGY-GGIVDVIS

   WD40 Template    TGE----CLRTLSGHTSG----VTSVSFSPDGK-----RLVSGSEDGTIKVWD