Input parameters:

  Query = AT2G19520.1 (Len=507)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G19520.1, Len=507):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MESDEAAAVSPQATTPSGGTGASGPKKRGRKPKTKEDSQTPSSQQQSDVKMKESGKKTQQSPSVDEKYSQWKGLVPILYD 80  
WD40-rpts                                                                                      

Query       81 WLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKT 160 
WD40-rpts                                                                               (______

Query      161 IIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVETQPNRHAVLGAANSRPDLILTGHQDNAEFALAMCPTEPFVLSGGK 240 
WD40-rpts      ___________WD 1_________________)               (_________________WD 2__________

Query      241 DKSVVLWSIQDHITTIGTDSKSSGSIIKQTGEGTDKNESPTVGPRGVYHGHEDTVEDVAFSPTSAQEFCSVGDDSCLILW 320 
WD40-rpts      _______)(_____________WD 3____________)  (_________________WD 4_________________

Query      321 DARTGTNPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQWSPDKSS 400 
WD40-rpts      )     (_________________WD 5_________________)         (_________________WD 6___

Query      401 VFGSSAEDGLLNIWDYDRVSKKSDRAAKSPAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCETTGGGGTLQIWRMSD 480 
WD40-rpts      ______________)               (_____________________WD 7____________________)   

Query      481 LIYRPEEEVVAELEKFKSHVMTCASKP 507 
WD40-rpts                                 

7 WD40-repeats found in QUERY=AT2G19520.1 (Len=507):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   154-193      4.87  315.78  0.00345       15.0%     54.95
  WD 2:  Seg  8   209-248      6.39  378.43  0.00049       20.0%     49.03
  WD 3:  Seg 12   249-279      4.21  288.66  0.00799       15.0%     16.30
  WD 4:  Seg 14   282-321      7.48  423.83  0.00012       27.5%     53.48
  WD 5:  Seg 18   327-366      7.39  419.92  0.00014       22.5%     52.20
  WD 6:  Seg 22   376-415      7.87  439.66  7.4e-05       35.0%     53.12
  WD 7:  Seg 26   431-477      4.72  309.49  0.00419       27.5%     51.02

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  154-193    FVKKYKTIIHPGEVN-RIRELP-QNSKI-VATHTDS-------PDVLIWD
   WD 2  209-248    SRPDLILTGHQDNAEFALAMCP-TE-PF-VLSGGKD-------KSVVLWS
   WD 3  249-279    ------IQDHITTIG-TDSKSS-GS----IIKQTGE-------GTDKNES
   WD 4  282-321    VGPRGVYHGHEDTVE-DVAFSPTSA-QE-FCSVGDD-------SCLILWD
   WD 5  327-366    NPVTKVEKAHDADLH-CVDWNPHDD-NL-ILTGSAD-------NTVRLFD
   WD 6  376-415    GSPIYKFEGHKAAVL-CVQWSP-DK-SSVFGSSAED-------GLLNIWD
   WD 7  431-477    AGLFFQHAGHRDKVV-DFHWNASDP-WT-IVSVSDDCETTGGGGTLQIWR

   WD40 Template    GECLRTLSGHTSGVT-SVSFSP-DG-KR-LVSGSED-------GTIKVWD