Input parameters:

  Query = AT2G19540.1 (Len=469)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G19540.1, Len=469):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRNVKTKAKRKNKKKAEASSSEIPSIPTRVWQPGVDTLEDGEELQCDPSAYNSLHGFHVGWPCLSFDILGDKLGLNRTE 80  
WD40-rpts                                                                                      

Query       81 FPHTLYMVAGTQAEKAAHNSIGLFKITNVSGKRRDVVPKTFGNGEDEDEDDEDDSDSDDDDGDEASKTPNIQVRRVAHHG 160 
WD40-rpts                                  (________________WD 1_______________)          (____

Query      161 CVNRIRAMPQNSHICVSWADSGHVQVWDMSSHLNALAESETEGKDGTSPVLNQAPLVNFSGHKDEGYAIDWSPATAGRLL 240 
WD40-rpts      __________WD 2_____________)                        (_________________WD 3______

Query      241 SGDCKSMIHLWEPASGSWAVDPIPFAGHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPALSFKAHNADVNVIS 320 
WD40-rpts      ___________)(____________________WD 4____________________)    (_________________

Query      321 WNRLASCMLASGSDDGTFSIRDLRLIKGGDAVVAHFEYHKHPITSIEWSAHEASTLAVTSGDNQLTIWDLSLEKDEEEEA 400 
WD40-rpts      WD 5_________________)       (_________________WD 6_________________)           

Query      401 EFNAQTKELVNTPQDLPPQLLFVHQGQKDLKELHWHNQIPGMIISTAGDGFNILMPYNIQNTLPSELPA 469 
WD40-rpts                                                                           

6 WD40-repeats found in QUERY=AT2G19540.1 (Len=469):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   109-145      3.82  272.47  0.01318        5.0%     -21.93
  WD 2:  Seg  6   156-188      4.37  295.22  0.00653       22.5%     46.95
  WD 3:  Seg  9   213-252      5.35  335.59  0.00187       30.0%     51.90
  WD 4:  Seg 13   253-298      6.98  402.87  0.00023       32.5%     45.88
  WD 5:  Seg 16   303-342      6.73  392.56  0.00032       27.5%     50.30
  WD 6:  Seg 20   350-389      6.88  398.85  0.00026       22.5%     54.12

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  109-145    --------VSGKRRDVVPKTFGNGEDE-DED-DE-DDSDSDDDDGDEA
   WD 2  156-188    -------------VAHHGCVNRIRAMP-QNS-HICVSWADSGHVQVWD
   WD 3  213-252    -QA-----PLVNFSGHKDEGYAIDWSPATAG-RL-LSGDCKSMIHLWE
   WD 4  253-298    PASGSWAVDPIPFAGHTASVEDLQWSPAEEN-VF-ASCSVDGSVAVWD
   WD 5  303-342    -KS-----PALSFKAHNADVNVISWNR-LASCML-ASGSDDGTFSIRD
   WD 6  350-389    -DA-----VVAHFEYHKHPITSIEWSAHEAS-TL-AVTSGDNQLTIWD

   WD40 Template    TGE-----CLRTLSGHTSGVTSVSFSP-DGK-RL-VSGSEDGTIKVWD