Input parameters:

  Query = AT2G20330.1 (Len=648)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G20330.1, Len=648):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEDELEGLRAHFPVSFGKTSKVSASTEAIHSATRRTDVANDAGVSSDITTKKPDSDKSGFPSLSSSSQTWLRSVRGPNRN 80  
WD40-rpts                  (__________________WD 1__________________)   (______________________

Query       81 PNSSGDVAMGPPPPPSSKRTQEEEEEDEEVMMGPPPPPKGLGNINDSDDEGDMIGPPPPPPAARDSDEDSDDDDDNDNEE 160 
WD40-rpts      ____WD 2_________________________)   (_____________________WD 3_________________

Query      161 NRYQIPLSNEIQLKGHTKIVSSLAVDSAGARVLSGSYDYTVRMYDFQGMNSRLQSFRQIEPSEGHQVRSVSWSPTSGQFL 240 
WD40-rpts      ___)         (_____________WD 4_____________)          (________________WD 5____

Query      241 CVTGSAQAKIFDRDGLTLGEFMKGDMYIRDLKNTKGHICGLTCGEWHPRTKETVLTSSEDGSLRIWDVNNFLSQTQVIKP 320 
WD40-rpts      ___________)          (____________________WD 6___________________)(____________

Query      321 KLARPGRVPVTTCAWDRDGKRIAGGVGDGSIQIWSLKPGWGSRPDIYVGKAHTDDITSVKFSSDGRILLSRSFDGSLKVW 400 
WD40-rpts      _________WD 7_____________________)          (_______________WD 8_______________

Query      401 DLRQMKEALKVFEGLPNYYPQTNVAFSPDEQIILTGTSVEKDSTTGGLLCFYDRTKLEIVQKVGISPTSSVVQCAWHPRL 480 
WD40-rpts      )    (__________________WD 9_________________)       (___________________WD10___

Query      481 NQIFATSGDKSQGGTHILYDPSQSERGACVCVARAPRKKSVDDYQPEPVIHNPHALPLFRDAPSRKREREKALKDPMKSH 560 
WD40-rpts      _______________)________________WD11_________________)                (_________

Query      561 KPEIPMTGPGHGGRVGTTGSGLLTQYLLKQGGMIKETWMEEDPREAILKYAEVAVKDPKFIAPAYSQTQPKTIFAKSDDE 640 
WD40-rpts      ________WD12________________)                                                   

Query      641 EEEGDTKK 648 
WD40-rpts              

12 WD40-repeats found in QUERY=AT2G20330.1 (Len=648):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-54       7.47  423.18  0.00012       25.0%     32.02
  WD 2:  Seg  4    58-114      4.03  281.00  0.01013       12.5%     32.55
  WD 3:  Seg  6   118-164      4.08  283.09  0.00949       10.0%      6.02
  WD 4:  Seg  8   174-205      7.67  431.58  9.5e-05       32.5%     45.72
  WD 5:  Seg 11   216-252      6.18  369.93  0.00064       25.0%     48.10
  WD 6:  Seg 16   263-307      8.38  460.96  3.8e-05       35.0%     48.14
  WD 7:  Seg 20   308-355      8.02  445.94  6.1e-05       30.0%     49.12
  WD 8:  Seg 24   366-401      9.43  504.24  9.9e-06       45.0%     46.71
  WD 9:  Seg 27   406-446      5.57  344.73  0.00141       25.0%     32.93
  WD10:  Seg 31   454-496      6.47  382.05  0.00044       15.0%     47.23
  WD11:  Seg 34   495-534      7.60  428.75  0.00010       12.5%     27.61
  WD12:  Seg 38   551-589      7.00  403.62  0.00023       12.5%     24.24

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-54     PV----S---FG--------KTSKVSASTE--AIHSATRRT--------D------------------VA-NDAGVSSDITTKKPD
   WD 2   58-114    -S----G---FP--------SL--SSSSQT--WLRSVRGPN--------RNPNSSGDVAMGPPPPPSSKR-TQEEEEEDEEVMMGP
   WD 3  118-164    -P----K---GL--------GN--INDSDD--EGDMIGPPPPPPAARDSD------------------ED-SDDDDDNDNEENRYQ
   WD 4  174-205    -------------------------KGHTK--IVSSLAVDS--------A------------------GA-RVLSGSYDYTVRMYD
   WD 5  216-252    -F----R---QI--------EP--SEGHQ----VRSVSWSP--------T------------------SG-QFLCVTGSAQAKIFD
   WD 6  263-307    KGDMYIR---DL--------KN--TKGHIC--GLTCGEWHP--------R------------------TKETVLTSSEDGSLRIWD
   WD 7  308-355    VN----N---FLSQTQVIKPKL--ARPGRV--PVTTCAWDR--------D------------------GK-RIAGGVGDGSIQIWS
   WD 8  366-401    -----------I--------YV--GKAHTD--DITSVKFSS--------D------------------GR-ILLSRSFDGSLKVWD
   WD 9  406-446    -K----E---AL--------KV--FEGLPNYYPQTNVAFSP--------D------------------EQ-IILTGTSVEKDSTTG
   WD10  454-496    RT----KLEIVQ--------KV--GISPTS--SVVQCAWHP--------R------------------LN-QIFATSGDKSQGGTH
   WD11  495-534    TH----I---LY--------DP--SQSERG--ACVCVARAP--------R------------------KK-SVDDYQPEPVIHNPH
   WD12  551-589    -K----A---LK--------DP--MKSHKP--EIPMTGPGH--------G------------------GR-VGTTGSGLLTQYLLK

   WD40 Template    TG----E---CL--------RT--LSGHTS--GVTSVSFSP--------D------------------GK-RLVSGSEDGTIKVWD