Input parameters:

  Query = AT2G21390.1 (Len=1218)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G21390.1, Len=1218):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNY 80  
WD40-rpts      (________________WD 1_______________)   (_________________WD 2________________) 

Query       81 KTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 
WD40-rpts        (_________________WD 3________________)   (_________________WD 4______________

Query      161 VWDIGALKKKSASPADDLMRFSQMNSDLFGGVDAIVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 
WD40-rpts      __)                              (_________________WD 5________________)(_______

Query      241 VDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILAVHPEINLLAAGHDNGMIVFKLER 320 
WD40-rpts      ____________WD 6___________________)   (________________WD 7________________)   

Query      321 ERPAFALSGDSLFYAKDRFLRYYEYSTQKDSQVIPIRRPGTPSLNQSPRTLSYSPTENAVLICSDLDGGSYELYIIPKDS 400 
WD40-rpts                                                                                      

Query      401 VGRSDVVQDAKRGTGGSAVFIARNRFAVLEKSTSQVLVKNLKNEVVKKSSLPIPTDAIFYAGTGNLLCRSEDKVVIFDLQ 480 
WD40-rpts                                                                                    (_

Query      481 QRLVLGELQTPFVRYVVWSNDMESVALLSKHTIIIASKKLVLQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDS 560 
WD40-rpts      ________________WD 8_________________)                                          

Query      561 GIIRTLDVPIYITKVSGNTIFCLDRDGKNRAITINATEYIFKLALLRKKYDHVMSMIKNSQLCGQAMIAYLQQKGFPEVA 640 
WD40-rpts                                                                                      

Query      641 LHFVEDERIRFNLALESGNISVAVASATEINEKDHWYRLGVEALRQGNSRIVEFAYQQTKNFERLSFLYLITGNLDKLSK 720 
WD40-rpts                                                                                      

Query      721 LMKIAEVKNNVMGQFHNALYLGDVKERVKILENAGHLPLAYITASVHGLTDIAERLAIELGDNVPSLPEGKTPSLLMPPS 800 
WD40-rpts                                                                                      

Query      801 PIMCGGDWPLLRVMKGIFEGGLESANRGAVDEEEEDVEGDWGEGLDKFDVDGMENTDIEAILDGAEAGEEEDDEEGGWGL 880 
WD40-rpts                                                                                      

Query      881 DLDLPPELDTPKASANARSSTFVTPPQGMPVSQIWSQKSSLAAEQAAAGSFDTAMRLLHRQLGIKNFAPLKSMFLDLFSG 960 
WD40-rpts                                                                                      

Query      961 SHSYLRAFSSSPVVPLAIERGWSESSSPNVRGPPALVFDFSQLEAKLKSGYKATTAGKLSEALRVFLSILQTIPLVVVES 1040
WD40-rpts                                                                                      

Query     1041 RREVDEVKELVIIVKEYVLGLQLELKRREMKDDPVRQQELAAYFTHCKLQTPHLRLAYFSAMTVCYKSKNMATAAHFARS 1120
WD40-rpts                                                                                      

Query     1121 LLDTNPTIESQARTARQVMQAAERNMTDATTLNYDFRNPFVICGSTYVPIYKGQKDVACPYCTARFVPSQEGNICSVCDL 1200
WD40-rpts                                                                                      

Query     1201 AVIGADASGLLCSASQVR 1218
WD40-rpts                        

8 WD40-repeats found in QUERY=AT2G21390.1 (Len=1218):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       5.01  321.78  0.00287       22.5%     47.18
  WD 2:  Seg  4    41-79       7.29  415.85  0.00015       32.5%     57.54
  WD 3:  Seg  8    83-121      8.53  466.85  3.2e-05       37.5%     54.65
  WD 4:  Seg 12   125-163      8.83  479.25  2.2e-05       40.0%     56.97
  WD 5:  Seg 17   194-232      7.57  427.44  0.00011       35.0%     56.11
  WD 6:  Seg 21   233-276      8.50  465.77  3.3e-05       45.0%     53.13
  WD 7:  Seg 25   280-317      3.09  242.48  0.03310       15.0%     57.67
  WD 8:  Seg 44   479-518      3.07  241.62  0.03398       20.0%     42.50

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     ---M----LTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWD
   WD 2   41-79     -GTL----IDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWN
   WD 3   83-121    -HRC----LFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWN
   WD 4  125-163    -RTC----ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD
   WD 5  194-232    -AIV----KYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWR
   WD 6  233-276    MNETKAWEVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWD
   WD 7  280-317    -RTG----IQTFRREHDRFWILAVHPEINLLAAGH-DNGMIVFK
   WD 8  479-518    LQQR----LVLGELQTPFVRYVVWSNDMESVALLSKHTIIIASK

   WD40 Template    TGEC----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD