Input parameters:

  Query = AT2G22040.1 (Len=313)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G22040.1, Len=313):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFENKPDDSPVYLATASHDQTIRLWQARTGRCYFSFRYPDLHVNRLELTPEKGKLVAACNPHIRLFDLRSYNPHIPVRNF 80  
WD40-rpts      (__________WD 1__________)   (________________WD 2________________)      (______

Query       81 VSHTKNVMAVGFQYTGHMMYSGSEDGSVKIWDLRVRECQREFRSVSPVNTVVLHPNQTELISGDQNGNIRVWDLRADLCS 160 
WD40-rpts      ___________WD 3________________)   (________________WD 4________________)   (___

Query      161 CELVPEVGTPIRSLTVMWDGTMVVAANDRGTCYVWRSLCERQTMTEFEPLHKLQAHNSHILKCLLSPGNNRYLATASSDK 240 
WD40-rpts      ______________WD 5_________________)          (_________________WD 6____________

Query      241 TVKIWNLDGFKLEKVLTGHERWVWDCDFSMDGEYLVTASSDTTARLWSMRAGKEEMVYQAHRKATVCCTLLRD 313 
WD40-rpts      _____)   (_________________WD 7________________)                         

7 WD40-repeats found in QUERY=AT2G22040.1 (Len=313):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-26       3.32  251.68  0.02498       15.0%     31.65
  WD 2:  Seg  4    30-67       7.50  424.32  0.00012       20.0%     55.89
  WD 3:  Seg  8    74-112      9.73  516.65  6.8e-06       40.0%     52.66
  WD 4:  Seg 12   116-153      8.27  456.30  4.4e-05       37.5%     57.86
  WD 5:  Seg 16   157-196      7.58  427.67  0.00011       25.0%     56.98
  WD 6:  Seg 20   207-246      8.23  454.43  4.7e-05       32.5%     52.55
  WD 7:  Seg 24   250-288      9.83  520.80  5.9e-06       35.0%     56.87

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-26     --------------MFENKPDD-SPVYLATASHDQTIRLWQ
   WD 2   30-67     GRCYFSFRYPDL-HVNRLELTP-EKGKLVAAC-NPHIRLFD
   WD 3   74-112    HIPVRNFVSHTK-NVMAVGFQY-TGHMMYSGSEDGSVKIWD
   WD 4  116-153    RECQREFRSV-S-PVNTVVLHP-NQTELISGDQNGNIRVWD
   WD 5  157-196    DLCSCELVPEVGTPIRSLTVMW-DGTMVVAANDRGTCYVWR
   WD 6  207-246    FEPLHKLQAHNS-HILKCLLSPGNNRYLATASSDKTVKIWN
   WD 7  250-288    FKLEKVLTGHER-WVWDCDFSM-DGEYLVTASSDTTARLWS

   WD40 Template    GECLRTLSGHTS-GVTSVSFSP-DGKRLVSGSEDGTIKVWD