Input parameters:

  Query = AT2G25420.1 (Len=740)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G25420.1, Len=740):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MILDEKNRKNLVFLILQFFDEEGYEESLHLLEQDSGVFFDFSYLSNAILNGNWKDADDYLSAFTSPEANTFSRKMFFGLF 80  
WD40-rpts                                                                                      

Query       81 KLKFSEAPDRSGGSEAVKIFSKDLRRIPVLKDDSFDDLVEVIAVDDMRIPEETCCVDKAPGRAKLCVDLHKLAESNPSLR 160 
WD40-rpts                                                                                      

Query      161 GKLDFPSLNKSALLALISLLCPNCSRRKGGLKEDLICLILQFLYEAKYKNTLHKLEQETKVFFNLNYLAEVMKLGEYGKA 240 
WD40-rpts                                                                                      

Query      241 EEYLGAFTNWEDNKYSKAMFLELQKLICLQSTEWEVATPSGSLDNMSLKIKLHASVAMLAKKNPVLKDELKFPSMEKSRL 320 
WD40-rpts                                                                                      

Query      321 LTLVKQTMDWWTCNNTSSLENVPVVSYLCGTPSSMKFFFKKTVPRKKKPNEIKDPSQCNALVLPDCFSEEKIARLTYSPS 400 
WD40-rpts                                                                    (_______________WD

Query      401 GDYILALAEDATHKLWTWSSSQNEFCKENVYPKPRLHQPQSGKTMENEMATSVQKSTSCFAVKGSYLFSTSGGKIAVFDL 480 
WD40-rpts       1______________)                           (_______________WD 2______________) 

Query      481 KNFEKVASFGSPTPMATYFIFIPGDLLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFSRCFNVLVSSDSDGKLCL 560 
WD40-rpts        (________________WD 3________________)   (_________________WD 4_______________

Query      561 WSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELLVVHDGWIGLYEVRTLDCRLQWIPDASDPAITSATYSS 640 
WD40-rpts      _)              (________________WD 5________________)(___________________WD 6__

Query      641 DGEIIYVGFRCGSIKIVDSKTFMTLCQINLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGGW 720 
WD40-rpts      _________________)   (__________________WD 7__________________)                 

Query      721 GEAAPLEDNGDYSNDSDHSY 740 
WD40-rpts                          

7 WD40-repeats found in QUERY=AT2G25420.1 (Len=740):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   383-417      8.27  456.07  4.4e-05       20.0%     43.55
  WD 2:  Seg 10   445-479      6.74  392.98  0.00031       22.5%     45.66
  WD 3:  Seg 13   483-520      7.46  422.68  0.00013       27.5%     54.19
  WD 4:  Seg 17   524-562      9.70  515.22  7.1e-06       30.0%     49.96
  WD 5:  Seg 22   577-614      6.94  401.14  0.00024       30.0%     42.07
  WD 6:  Seg 25   615-658      8.54  467.27  3.1e-05       25.0%     55.60
  WD 7:  Seg 29   662-703      3.62  264.24  0.01698        7.5%     42.26

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  383-417    ---------LPDCFSEEKIARLTYSP---SGDYILALAEDATHKLWT
   WD 2  445-479    --------MENEMATSVQKSTSCFAV---KGSYLFSTS-GGKIAVFD
   WD 3  483-520    -F----EKVASFGSPTPMATYFIFIP----GDLLAVGLDDGSIFIHC
   WD 4  524-562    -R----KVKEKLEGHDQKITCLAFSR---CFNVLVSSDSDGKLCLWS
   WD 5  577-614    -K----FCNRSNLESTSLVTHIQFDP---YQIELLVVH-DGWIGLYE
   WD 6  615-658    VRTLDCRLQWIPDASDPAITSATYSS---DGEIIYVGFRCGSIKIVD
   WD 7  662-703    -F----MTLCQINLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAG

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSP---DGKRLVSGSEDGTIKVWD