Input parameters:

  Query = AT2G26060.1 (Len=352)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G26060.1, Len=352):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDLMEKNLELVEIQKLEGHTDRVWSVAWNPVSSHADGVSPILASCSGDNTVRIWEQSSLSRSWTCKTVLEETHTRTVRSC 80  
WD40-rpts               (____________________WD 1____________________)          (______________

Query       81 AWSPSGQLLATASFDGTTGIWKNYGSEFECISTLEGHENEVKSVSWNASGSCLATCSRDKSVWIWEVLEGNEYDCAAVLT 160 
WD40-rpts      __WD 2_______________)     (_________________WD 3________________)      (_______

Query      161 GHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWSEDDDGEYQCVQTLGESNNGHSSTVWSISFNAAGDKMVTCSDDLTLKIW 240 
WD40-rpts      __________WD 4________________)              (_______________WD 5_______________

Query      241 GTDIAKMQSGEEYAPWIHLCTLSGYHDRTIYSAHWSRDDIIASGAGDNAIRLFVDSKHDSVDGPSYNLLLKKNKAHENDV 320 
WD40-rpts      )              (_________________WD 6________________)            (_____________

Query      321 NSVQWSPGEGNRLLASASDDGMVKIWQLATKP 352 
WD40-rpts      _____WD 7_________________)     

7 WD40-repeats found in QUERY=AT2G26060.1 (Len=352):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    10-55       7.92  441.92  6.9e-05       35.0%     50.81
  WD 2:  Seg  6    66-102      8.61  470.27  2.9e-05       32.5%     45.77
  WD 3:  Seg  9   108-146      9.91  523.94  5.4e-06       37.5%     45.55
  WD 4:  Seg 13   153-191      9.53  508.14  8.8e-06       42.5%     45.84
  WD 5:  Seg 18   206-241      9.28  498.19  1.2e-05       35.0%     42.90
  WD 6:  Seg 21   256-294      5.74  351.84  0.00113       32.5%     54.17
  WD 7:  Seg 24   307-347      7.64  430.15  9.9e-05       35.0%     47.85

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-55     -LVEIQKLEG-HTDRVWSVAWNP--VSSHADGVSPILASCSGDNTVRIWE
   WD 2   66-102    KTVL---EET-HTRTVRSCAWSP--SGQL-------LATASFDGTTGIWK
   WD 3  108-146    -FECISTLEG-HENEVKSVSWNA--SGSC-------LATCSRDKSVWIWE
   WD 4  153-191    -YDCAAVLTG-HTQDVKMVQWHP--TMDV-------LFSCSYDNTIKVWW
   WD 5  206-241    ----GESNNG-HSSTVWSISFNA--AGDK-------MVTCSDDLTLKIWG
   WD 6  256-294    -WIHLCTLSGYHDRTIYSAHWSR--DD-I-------IASGAGDNAIRLFV
   WD 7  307-347    -NLLLKKNKA-HENDVNSVQWSPGEGNRL-------LASASDDGMVKIWQ

   WD40 Template    TGECLRTLSG-HTSGVTSVSFSP--DGKR-------LVSGSEDGTIKVWD