Input parameters:

  Query = AT2G26060.2 (Len=337)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G26060.2, Len=337):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDLMEKNLELVEIQKLEGHTDRVWSVAWNPVSSHADGVSPILASCSGDNTVRIWEQSSLSRSWTCKTVLEETHTRTVRSC 80  
WD40-rpts               (____________________WD 1____________________)          (______________

Query       81 AWSPSGQLLATASFDGTTGIWKNYGSEFECISTLEGHENEVKSVSWNASGSCLATCSRDKSVWIWEVLEGNEYDCAAVLT 160 
WD40-rpts      __WD 2_______________)     (_________________WD 3________________)      (_______

Query      161 GHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWSEDDDGEYQCVQTLGESNNGHSSTVWSISFNAAGDKMVTCSDDLTLKIW 240 
WD40-rpts      __________WD 4________________)             (________________WD 5_______________

Query      241 GTDIAKMQSGEEYAPWIHLCTLSGYHDRTIYSAHWSRDDIIASGAGDNAIRLFVDSKHDSVDGPSYNLLLKKNKAHENDV 320 
WD40-rpts      )              (_________________WD 6________________)                          

Query      321 NSVQWSPGVREPVACVG 337 
WD40-rpts                       

6 WD40-repeats found in QUERY=AT2G26060.2 (Len=337):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    10-55       7.92  441.87  6.9e-05       35.0%     50.75
  WD 2:  Seg  6    66-102      8.68  473.15  2.6e-05       32.5%     45.28
  WD 3:  Seg  9   108-146      9.97  526.69  5.0e-06       37.5%     51.88
  WD 4:  Seg 13   153-191      9.58  510.23  8.3e-06       42.5%     51.70
  WD 5:  Seg 18   205-241      9.63  512.39  7.7e-06       40.0%     44.35
  WD 6:  Seg 21   256-294      5.61  346.38  0.00134       32.5%     55.19

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-55     -LVEIQKLEG-HTDRVWSVAWNPVSSHADGVSPILASCSGDNTVRIWE
   WD 2   66-102    KTV---LEET-HTRTVRSCAWSPSGQL-------LATASFDGTTGIWK
   WD 3  108-146    -FECISTLEG-HENEVKSVSWNASGSC-------LATCSRDKSVWIWE
   WD 4  153-191    -YDCAAVLTG-HTQDVKMVQWHPTMDV-------LFSCSYDNTIKVWW
   WD 5  205-241    LGE---SNNG-HSSTVWSISFNAAGDK-------MVTCSDDLTLKIWG
   WD 6  256-294    -WIHLCTLSGYHDRTIYSAHWSRDD-I-------IASGAGDNAIRLFV

   WD40 Template    TGECLRTLSG-HTSGVTSVSFSPDGKR-------LVSGSEDGTIKVWD