WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: AT2G26610.1 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT2G26610.1 (Len=1249) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT2G26610.1, Len=1249): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MCSSSDCILPGPPSRSNLSAADLSPSGLLAFASGSSVSLVDSRSLQLISSVSLPSPISCAFSTVTSVRWAPVPVQRDLFS 80
WD40-rpts (________________WD 1________________) (_____________________WD 2____
Query 81 SDLLIAVGDHLGRIALVDFRLCSVRLWLEQSCDSASARGKSLGCGGVQDLCWVLARPDSYVLAAITGPSSLSLYTDSGQL 160
WD40-rpts _________________) (_____________________WD 3____________________) (__
Query 161 FWKYDASPEYLSCIRCDPFDSRHFCVLGLKGFLLSLKLLGTTENDVPTKEFQIQTDCSDLQKLEREVVASSSHSTCPASA 240
WD40-rpts _______________WD 4_________________) (____________
Query 241 VFPLYSAKFSFSPHWKHILFATFPRELFVFDLKYEAALYVVALPRGYAKFVDVLPDPSQEFLYCLHLDGRLSIWRRKEGE 320
WD40-rpts _______WD 5___________________) (_________________WD 6________________) (_
Query 321 QVHVLCAIEEFMPTIGNSVPSPSLLTLLISQLDSTLQNIRTIHSDALLDSSELEISFDFNNDAFLLFKTHFISISDDGKI 400
WD40-rpts ________________WD 7_________________) (_________________WD 8_____________
Query 401 WSWILTFNGDEDSNPQTNENLIESPTNGNQDLHPNISFEITLVGQLQLLSSAVTVLAIPTPSMTATLARGGNFPAVVVPL 480
WD40-rpts ___) (_________________WD 9_________________) (___________________WD10______
Query 481 VALGTEAGTIDVVDVSANAVAASFSAHTSSIRGLNWLGNSRLVSYSCSRVSKRTGGYVNKLVVTCLRSGVSRGFRVLQKP 560
WD40-rpts _____________) (_________________WD11________________) (______________
Query 561 ERAPIRALRASSSGRYLLILFRDAPVEVWAMTKSPVMLRSLALPFTVLEWTLPTIPSIAQKSLSKQLSMSSNQEVNVTPS 640
WD40-rpts ______WD12___________________) (__________________WD13__________________) (
Query 641 DIETPNASDSKAVAADALQDDASESFAFALVNGSLGVFEVYGRRIRDFRPKWPASSFISTDGLITAMAYRLPHVVTGDKL 720
WD40-rpts _________________WD14_________________) (_____________________WD15______________
Query 721 GNIRWWDVVSGNSSSFNTCKEGIKKIKFSPVFSGDISRGRITVLFYDNTFSIYDLDSPDPLAISLMRPQIPGTLILELDW 800
WD40-rpts ______) (____________________WD16___________________) (____________
Query 801 LPLRTSKFDSLVLCVAGTDGSFRLVEVHLDEKMTTQIPPKERFRSVPLCTPMLLPTPHALLGVKPSWFNTSSTCIDKRPH 880
WD40-rpts _____WD17________________)
Query 881 SIPGRTSSSKDLRSFMIDFPPIGDPAVLEMFLKVLEPYRSEGCLLDDEKAKLYSSLVNKGCAARFAFAAAIFGETSEALF 960
WD40-rpts
Query 961 WLQLPSAMKHVVNKTASKSAKKQFEETATLSKTSSKGPSSTGFEKNGSMSEGQLRLMAFEQKDLWVCANERIPWHEKLEG 1040
WD40-rpts
Query 1041 EEAIQNRVHELVSVGNLEGAVSLLLSTSPDSSYFYPNALRAVALSSTVSKSLVELAVKVVAANMVRSDRSLSGTHLLCSV 1120
WD40-rpts
Query 1121 GRYQEACSQLQDAGCWTDSATLAATHLNGSDYARVLQRWAGHVVNIEHNLWRGVILYVAVGAFEEALAVFRKAERAETAA 1200
WD40-rpts
Query 1201 IFIMACRETLADSWSIDPKNEDVMVVTESYALYQRKLVHLCMDSPPSFH 1249
WD40-rpts
 17 WD40-repeats found in QUERY=AT2G26610.1 (Len=1249): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 4-41 3.53 260.36 0.01914 17.5% 19.58 WD 2: Seg 4 51-98 4.83 314.20 0.00362 27.5% 35.36 WD 3: Seg 8 109-155 4.14 285.59 0.00879 20.0% 36.70 WD 4: Seg 11 158-197 3.70 267.60 0.01531 10.0% 49.54 WD 5: Seg 16 228-271 4.58 303.94 0.00498 17.5% 28.92 WD 6: Seg 19 277-315 4.40 296.53 0.00627 17.5% 53.23 WD 7: Seg 23 319-358 3.85 273.78 0.01266 15.0% 25.86 WD 8: Seg 25 366-404 4.87 315.85 0.00344 17.5% 34.48 WD 9: Seg 28 407-446 3.51 259.60 0.01959 5.0% 2.38 WD10: Seg 30 451-494 3.76 270.05 0.01420 25.0% 40.47 WD11: Seg 34 498-536 4.06 282.48 0.00968 10.0% 42.49 WD12: Seg 39 546-590 5.37 336.67 0.00181 15.0% 51.23 WD13: Seg 43 595-636 3.01 238.91 0.03691 15.0% 7.40 WD14: Seg 45 640-679 4.45 298.40 0.00591 10.0% 37.37 WD15: Seg 48 681-727 4.39 295.92 0.00638 22.5% 47.21 WD16: Seg 52 730-774 5.41 338.05 0.00173 20.0% 26.35 WD17: Seg 55 788-826 3.57 262.00 0.01820 15.0% 23.71Multiple sequence alignment of 17 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 4-41 SSD-----C----IL---------PGPPSRSNL---SAADL---S-P-SG-----------------LLAFAS------GSSVSLVD WD 2 51-98 -VS-----L----PS---------PISCAFSTV---TSVRW---A-P-VP------VQRDLFSSDLLIAVGDH------LGRIALVD WD 3 109-155 EQS-----CDSASAR---------GKSLGCGGV---QDLCWVLAR-P-DS------Y---------VLAAITG------PSSLSLYT WD 4 158-197 -GQ-----L----FW---------KYDASPEYL---SCIRC---D-PFDS------R---------HFCVLGL------KGFLLSLK WD 5 228-271 VAS-SSHST----CP---------ASAVFPLYS---AKFSF---S-P-HW------K---------HILFATF------PRELFVFD WD 6 277-315 -AL-----Y----VV---------ALPRGYAKF---VDVLP---D-P-SQ------E---------FLYCLHL------DGRLSIWR WD 7 319-358 -GE-----Q----VH---------VLCAIEEFM---PTIGN---SVP-SP------S---------LLTLLIS------QLDSTLQN WD 8 366-404 -AL-----L----DS---------SELEISFDF---NNDAF---L-L-FK------T---------HFISISD------DGKIWSWI WD 9 407-446 FNG-----D----ED---------SNPQTNENL---IESPT---N-G-NQ------D---------LHPNISF------EITLVGQL WD10 451-494 --S-----A----VT---------VLAIPTPSM---TATLA---R-G-GNFPAVVVP---------LVALGTE------AGTIDVVD WD11 498-536 -NA-----V----AA---------SFSAHTSSI---RGLNW---L-G-NS------R---------LVSYSCS------RVSKRTGG WD12 546-590 LRSGVSRGF----RV---------LQKPERAPI---RALRA---S-S-SG------R---------YLLILFR------DAPVEVWA WD13 595-636 -PV-----M----LR---------SLALPFTVLEWTLPTIP---S-I-AQ------K---------SLSKQLS------MSSNQEVN WD14 640-679 -SD-----I----ET---------PNASDSKAV---AADAL---Q-D-DA-----SE---------SFAFALV------NGSLGVFE WD15 681-727 YGR-----R----IRDFRPKWPASSFISTDGLI---TAMAY---R-L-P-----------------HVVTGDK------LGNIRWWD WD16 730-774 -SG-----N----SS---------SFNTCKEGI---KKIKF---S-P-VF------S---------GDISRGRITVLFYDNTFSIYD WD17 788-826 -PQ-----I----PG---------TLILELDWL---PLRTS---K-F-DS------L---------VLCVAGT------DGSFRLVE WD40 Template TGE-----C----LR---------TLSGHTSGV---TSVSF---S-P-DG------K---------RLVSGSE------DGTIKVWD |
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