Input parameters:

  Query = AT2G30050.1 (Len=302)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G30050.1, Len=302):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPGQKIETGHEDIVHDVQMDYYGKRIATASSDCTIKITGVSNNGGSQQLATLTGHRGPVWEVAWAHPKYGSILASCSYDG 80  
WD40-rpts         (_______________WD 1_______________)      (__________________WD 2____________

Query       81 QVILWKEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP 160 
WD40-rpts      _____)(_____________________WD 3____________________) (_________________________

Query      161 ATAPGALVSSGLLDPVYKLASGGCDNTVKVWKLANGSWKMDCFPALQKHTDWVRDVAWAPNLGLPKSTIASGSQDGKVII 240 
WD40-rpts      _WD 4__________________________)       (___________________WD 5_________________

Query      241 WTVGKEGEQWEGKVLKDFMTPVWRVSWSLTGNLLAVSDGNNNVTVWKEAVDGEWEQVTAVEP 302 
WD40-rpts      _)(____________________WD 6___________________)               

6 WD40-repeats found in QUERY=AT2G30050.1 (Len=302):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-39       8.44  463.31  3.5e-05       30.0%     48.15
  WD 2:  Seg  4    46-86       7.83  437.99  7.8e-05       35.0%     54.54
  WD 3:  Seg  8    87-133      7.85  439.13  7.5e-05       35.0%     55.97
  WD 4:  Seg 12   135-192      7.43  421.61  0.00013       42.5%     49.85
  WD 5:  Seg 16   200-242      8.05  447.24  5.8e-05       32.5%     46.61
  WD 6:  Seg 19   243-287      8.16  451.81  5.1e-05       25.0%     50.04

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-39     -------------QKIETGHEDIVHDVQMD--YY----G--------------KRIATASSDCTIKITG
   WD 2   46-86     -S----Q-----QLATLTGHRGPVWEVAWAHPKY----G--------------SILASCSYDGQVILWK
   WD 3   87-133    EG----NQNQWTQDHVFTDHKSSVNSIAWA--PH--DIG--------------LSLACGSSDGNISVFT
   WD 4  135-192    RADGGWD-----TSRIDQAHPVGVTSVSWA--PA----TAPGALVSSGLLDPVYKLASGGCDNTVKVWK
   WD 5  200-242    -M----D-----CFPALQKHTDWVRDVAWA--PNLGLPK--------------STIASGSQDGKVIIWT
   WD 6  243-287    VG----KEGEQWEGKVLKDFMTPVWRVSWS--LT----G--------------NLLAVSDGNNNVTVWK

   WD40 Template    TG----E-----CLRTLSGHTSGVTSVSFS--PD----G--------------KRLVSGSEDGTIKVWD