Input parameters:
Query = AT2G30910.1 (Len=378)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT2G30910.1, Len=378):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAVVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSY 80
WD40-rpts (________________WD 1________________) (_________________WD 2______________
Query 81 VWSLEGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLL 160
WD40-rpts __)(___________________WD 3___________________) (___________________WD 4_______
Query 161 ATTSTDGKCRVFSTFIKGVDTKDSKAGSPAETKFGEQILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVDDVGPSPL 240
WD40-rpts ____________) (_________________WD 5________________) (__
Query 241 AQSVAFRDLPLRDVLFISEKMVIGVGYDSNPMVFASDDTGIWSFIRYIGEKKAASSNSSYSSQFSEAFGKFYGSQSKSTT 320
WD40-rpts ______________WD 6________________) (_________________WD 7________________)
Query 321 ANDASESRGGVHDNCINSIVSLSKAGSPKVMRFSTSGLDGKVAIWDLENMEQELGNQF 378
WD40-rpts
7 WD40-repeats found in QUERY=AT2G30910.1 (Len=378):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-38 7.77 435.45 8.4e-05 10.0% 50.05
WD 2: Seg 5 45-83 8.74 475.84 2.4e-05 27.5% 52.30
WD 3: Seg 9 84-127 7.14 409.73 0.00019 15.0% 55.28
WD 4: Seg 13 130-173 8.95 484.51 1.8e-05 30.0% 54.45
WD 5: Seg 17 195-233 7.57 427.32 0.00011 27.5% 57.46
WD 6: Seg 21 238-275 4.97 320.07 0.00302 10.0% 52.80
WD 7: Seg 25 280-318 5.73 351.49 0.00114 7.5% 18.48
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-38 --M----A----VVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYK
WD 2 45-83 -WE----R----LHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWS
WD 3 84-127 LEG----AEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICY
WD 4 130-173 QENNWWVS----KLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFS
WD 5 195-233 -GE----Q----ILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVD
WD 6 238-275 -SP----L----AQSVAFRDLPLRDVLFISEKM-VIGVGYDSNPMVFA
WD 7 280-318 -GI----W----SFIRYIGEKKAASSNSSYSSQFSEAFGKFYGSQSKS
WD40 Template TGE----C----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD