Input parameters:
Query = AT2G30910.2 (Len=378)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT2G30910.2, Len=378):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAVVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSY 80
WD40-rpts (________________WD 1________________) (_________________WD 2______________
Query 81 VWSLEGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLL 160
WD40-rpts __)(___________________WD 3___________________) (___________________WD 4_______
Query 161 ATTSTDGKCRVFSTFIKGVDTKYAHYLNGAFFLLKQQILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVDDVGPSPL 240
WD40-rpts ____________) (_________________WD 5________________) (__
Query 241 AQSVAFRDLPLRDVLFISEKMVIGVGYDSNPMVFASDDTGIWSFIRYIGEKKAASSNSSYSSQFSEAFGKFYGSQSKSTT 320
WD40-rpts _______________WD 6________________) (_________________WD 7________________)
Query 321 ANDASESRGGVHDNCINSIVSLSKAGSPKVMRFSTSGLDGKVAIWDLENMEQELGNQF 378
WD40-rpts
7 WD40-repeats found in QUERY=AT2G30910.2 (Len=378):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-38 7.88 440.27 7.2e-05 10.0% 51.33
WD 2: Seg 5 45-83 8.84 479.72 2.1e-05 27.5% 56.56
WD 3: Seg 9 84-127 7.16 410.55 0.00018 15.0% 56.81
WD 4: Seg 13 130-173 9.00 486.32 1.7e-05 30.0% 54.02
WD 5: Seg 18 195-233 8.63 471.03 2.8e-05 22.5% 58.38
WD 6: Seg 22 238-276 6.44 380.54 0.00046 7.5% 50.11
WD 7: Seg 26 282-320 6.30 375.05 0.00055 10.0% 17.71
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-38 --M----A----VVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYK
WD 2 45-83 -WE----R----LHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWS
WD 3 84-127 LEG----AEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICY
WD 4 130-173 QENNWWVS----KLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFS
WD 5 195-233 -KQ----Q----ILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVD
WD 6 238-276 -SP----L----AQSVAFRDLPLRDVLFISEKMVIGVGYDSNPMVFAS
WD 7 282-320 -WS----F----IRYIGEKKAASSNSSYSSQFSEAFGKFYGSQSKSTT
WD40 Template TGE----C----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD