Input parameters:

  Query = AT2G30910.3 (Len=378)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G30910.3, Len=378):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAVVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSY 80  
WD40-rpts      (________________WD 1________________)      (_________________WD 2______________

Query       81 VWSLEGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLL 160 
WD40-rpts      __)(___________________WD 3___________________)  (___________________WD 4_______

Query      161 ATTSTDGKCRVFSTFIKGVDTKDSKAGSPAETKFGEQILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVDDVGPSPL 240 
WD40-rpts      ____________)                     (_________________WD 5________________)    (__

Query      241 AQSVAFRDLPLRDVLFISEKMVIGVGYDSNPMVFASDDTGIWSFIRYIGEKKAASSNSSYSSQFSEAFGKFYGSQSKSTT 320 
WD40-rpts      ______________WD 6________________)    (_________________WD 7________________)  

Query      321 ANDASESRGGVHDNCINSIVSLSKAGSPKVMRFSTSGLDGKVAIWDLENMEQELGNQF 378 
WD40-rpts                                                                

7 WD40-repeats found in QUERY=AT2G30910.3 (Len=378):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       7.97  443.77  6.5e-05       10.0%     51.58
  WD 2:  Seg  5    45-83       8.81  478.51  2.2e-05       27.5%     56.18
  WD 3:  Seg  9    84-127      7.18  411.28  0.00018       15.0%     57.01
  WD 4:  Seg 13   130-173      8.95  484.55  1.8e-05       30.0%     55.04
  WD 5:  Seg 17   195-233      7.59  428.26  0.00011       27.5%     57.83
  WD 6:  Seg 21   238-275      5.20  329.32  0.00227       10.0%     52.53
  WD 7:  Seg 25   280-318      5.61  346.43  0.00133        7.5%     20.08

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     --M----A----VVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYK
   WD 2   45-83     -WE----R----LHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWS
   WD 3   84-127    LEG----AEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICY
   WD 4  130-173    QENNWWVS----KLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFS
   WD 5  195-233    -GE----Q----ILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVD
   WD 6  238-275    -SP----L----AQSVAFRDLPLRDVLFISEKM-VIGVGYDSNPMVFA
   WD 7  280-318    -GI----W----SFIRYIGEKKAASSNSSYSSQFSEAFGKFYGSQSKS

   WD40 Template    TGE----C----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD