Input parameters:
Query = AT2G31300.1 (Len=378)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT2G31300.1, Len=378):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAVVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSY 80
WD40-rpts (________________WD 1________________) (_________________WD 2______________
Query 81 VWSLEGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLL 160
WD40-rpts __)(___________________WD 3___________________) (___________________WD 4_______
Query 161 ATTSTDGKCRVFSTFIKGVDTKDSKAGSPAETKFGEQILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVDDVGPSPL 240
WD40-rpts ____________) (_________________WD 5________________) (__
Query 241 AQSVAFRDLPLRDVLFISEKMVIGVGYDSNPMVFAADDTGIWSFIRYIGEKKAASSGSSYSSQFSEAFGKFYGSQSKSTT 320
WD40-rpts ______________WD 6________________) (_________________WD 7________________)
Query 321 ANDASDSRGGVHDNSITSIVPLGKGGSPKVMRFSTSGLDGKIAIWDLENMQQELGNQF 378
WD40-rpts
7 WD40-repeats found in QUERY=AT2G31300.1 (Len=378):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-38 7.73 433.78 8.9e-05 10.0% 51.22
WD 2: Seg 5 45-83 8.76 476.63 2.3e-05 27.5% 52.32
WD 3: Seg 9 84-127 7.17 411.03 0.00018 15.0% 55.59
WD 4: Seg 13 130-173 9.00 486.42 1.7e-05 30.0% 52.83
WD 5: Seg 17 195-233 7.53 425.74 0.00011 27.5% 58.07
WD 6: Seg 21 238-275 4.99 320.79 0.00295 12.5% 49.38
WD 7: Seg 25 280-318 5.61 346.40 0.00134 7.5% 13.19
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-38 --M----A----VVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYK
WD 2 45-83 -WE----R----LHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWS
WD 3 84-127 LEG----AEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICY
WD 4 130-173 QENNWWVS----KLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFS
WD 5 195-233 -GE----Q----ILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVD
WD 6 238-275 -SP----L----AQSVAFRDLPLRDVLFISEKMVIGVGY-DSNPMVFA
WD 7 280-318 -GI----W----SFIRYIGEKKAASSGSSYSSQFSEAFGKFYGSQSKS
WD40 Template TGE----C----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD