WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: AT2G32700.2 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT2G32700.2 (Len=787) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT2G32700.2, Len=787): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEAAAAYIE 80
WD40-rpts
Query 81 AQQGKAKEQQMQIQQLQMMRQAQMQRRDPNHPSLGGPMNAIGSEGMIGQSNASALAAKMYEERMKQPNPMNSETSQPHLD 160
WD40-rpts
Query 161 ARMALLKSATNHHGQIVQGNHQGGVSAALQQIQSRTQQPTEIKTEVNLGTSPRQLPVDPSTVYGQGILQSKPGMGSAGLN 240
WD40-rpts
Query 241 PGVSGLPLKGWPLTGIEQMRPGLGGPQVQKSFLQNQSQFQLSPQQQQHQMLAQVQAQGNMTNSPMYGGDMDPRRFTGLPR 320
WD40-rpts
Query 321 GNLNPKDGQQNANDGSIGSPMQSSSSKHISMPPVQQSSSQQQDHLLSQQSQQNNRKRKGPSSSGPANSTGTGNTVGPSNS 400
WD40-rpts (___________________WD 1__________
Query 401 QPSTPSTHTPVDGVAIAGNMHHVNSMPKGPMMYGSDGIGGLASSANQLLQDDMDQFGDVGALEDNVESFLSQDDGDGGSL 480
WD40-rpts ________) (_________________WD 2________________) (_________________WD 3___
Query 481 FGTLKRNSSVHTETSKPFSFNEVSCIRKSASKVICCSFSYDGKLLASAGHDKKVFIWNMETLQVESTPEEHAHIITDVRF 560
WD40-rpts _____________) (_________________WD 4________________) (_________________W
Query 561 RPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINASCVRAVKGASTQV 640
WD40-rpts D 5________________) (_________________WD 6_________________) (_____________
Query 641 RFQPRTGQFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHELSNSGNK 720
WD40-rpts __WD 7_______________) (________________WD 8________________) (____________
Query 721 FHSVVFHPSYPDLLVIGGYQAIELWNTMENKCMTVAGHECVISALAQSPSTGVVASASHDKSVKIWK 787
WD40-rpts _____WD 9________________)(__________________WD10_________________)
 10 WD40-repeats found in QUERY=AT2G32700.2 (Len=787): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 367-409 3.59 262.85 0.01772 12.5% 1.44 WD 2: Seg 3 414-452 5.00 321.04 0.00293 15.0% 25.71 WD 3: Seg 5 456-494 7.14 409.55 0.00019 7.5% 40.81 WD 4: Seg 9 500-538 8.90 482.40 2.0e-05 30.0% 53.02 WD 5: Seg 13 542-580 9.60 511.11 8.0e-06 35.0% 53.86 WD 6: Seg 17 585-624 8.53 466.90 3.2e-05 40.0% 50.67 WD 7: Seg 21 627-662 6.78 394.63 0.00030 22.5% 50.89 WD 8: Seg 25 667-704 8.24 454.95 4.6e-05 37.5% 50.78 WD 9: Seg 29 708-746 8.80 478.16 2.2e-05 27.5% 57.36 WD10: Seg 33 747-787 8.72 474.69 2.5e-05 30.0% 53.41Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 367-409 ---------SQQSQQNNRKRKGPS----S-SGPANSTGTGNTVGPSNSQPSTPSTHT WD 2 414-452 ------VAIAGNMHHVNSMPKGPMMYGSD-GIGG-----------LASSANQLLQDD WD 3 456-494 -FG-DVGALEDNVESFLSQDDGDG----G-SLFG-----------TLKRNSSVHTET WD 4 500-538 -FN-EVSCIRKSASKVICCSFSYD----G-KLLA-----------SAGHDKKVFIWN WD 5 542-580 -LQ-VESTPEEHAHIITDVRFRPN----S-TQLA-----------TSSFDKTIKIWD WD 6 585-624 -GY-FLRTISGHAAPVMSIDFHPK----KTELLC-----------SCDSNNDIRFWD WD 7 627-662 -AS-CVRAVKGA---STQVRFQPR----T-GQFL-----------AAASENTVSIFD WD 8 667-704 -NK-RVNIFKGHSSNVHSVCWSPN----G-ELVA-----------SVSED-AVKLWS WD 9 708-746 -GD-CIHELSNSGNKFHSVVFHPS----Y-PDLL-----------VIGGYQAIELWN WD10 747-787 TMENKCMTVAGHECVISALAQSPS----T-GVVA-----------SASHDKSVKIWK WD40 Template TGE-CLRTLSGHTSGVTSVSFSPD----G-KRLV-----------SGSEDGTIKVWD |
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