WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: AT2G32700.7 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT2G32700.7 (Len=806) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT2G32700.7, Len=806): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEAAAAYIE 80
WD40-rpts
Query 81 AQQGKAKEQQMQIQQLQMMRQAQMQRRDPNHPSLGGPMNAIGSEGMIGQSNASALAAKMYEERMKQPNPMNSETSQPHLD 160
WD40-rpts
Query 161 ARMALLKSATNHHGQIVQGNHQGGVSAALQQIQSRTQQPTEIKTEVNLGTSPRQLPVDPSTVYGQGILQSKPGMGSAGKY 240
WD40-rpts (_________________WD 1________________)
Query 241 INVLHCRVIAHRKENGGLNPGVSGLPLKGWPLTGIEQMRPGLGGPQVQKSFLQNQSQFQLSPQQQQHQMLAQVQAQGNMT 320
WD40-rpts
Query 321 NSPMYGGDMDPRRFTGLPRGNLNPKDGQQNANDGSIGSPMQSSSSKHISMPPVQQSSSQQQDHLLSQQSQQNNRKRKGPS 400
WD40-rpts (________
Query 401 SSGPANSTGTGNTVGPSNSQPSTPSTHTPVDGVAIAGNMHHVNSMPKGPMMYGSDGIGGLASSANQLLQDDMDQFGDVGA 480
WD40-rpts ______WD 2______________) (_____
Query 481 LEDNVESFLSQDDGDGGSLFGTLKRNSSVHTETSKPFSFNEVSCIRKSASKVICCSFSYDGKLLASAGHDKKVFIWNMET 560
WD40-rpts ____________WD 3________________) (_________________WD 4________________)
Query 561 LQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIR 640
WD40-rpts (_________________WD 5________________) (_________________WD 6_______________
Query 641 FWDINASCVRAVKGASTQVRFQPRTGQFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVK 720
WD40-rpts __) (_______________WD 7_______________) (________________WD 8_____________
Query 721 LWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLLVIGGYQAIELWNTMENKCMTVAGHECVISALAQSPSTGVVASASHDK 800
WD40-rpts __) (_________________WD 9________________)(__________________WD10____________
Query 801 SVKIWK 806
WD40-rpts _____)
 10 WD40-repeats found in QUERY=AT2G32700.7 (Len=806): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 196-234 2.78 229.31 0.04941 17.5% -11.90 WD 2: Seg 5 392-425 2.78 229.35 0.04934 7.5% -18.43 WD 3: Seg 8 475-513 6.77 394.33 0.00030 7.5% 43.24 WD 4: Seg 12 519-557 8.74 475.66 2.4e-05 30.0% 52.77 WD 5: Seg 16 561-599 9.52 508.02 8.8e-06 35.0% 51.91 WD 6: Seg 20 604-643 8.40 461.61 3.7e-05 40.0% 50.28 WD 7: Seg 24 646-681 6.42 379.71 0.00047 22.5% 50.57 WD 8: Seg 28 687-723 8.15 451.43 5.1e-05 37.5% 44.83 WD 9: Seg 31 727-765 8.41 461.96 3.7e-05 27.5% 57.23 WD10: Seg 35 766-806 8.57 468.48 3.0e-05 30.0% 51.83Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 196-234 T-Q-QPTEIKTEVNLGTSPRQLPVD-PSTVYGQGILQSKPGM WD 2 392-425 -------NNRKRKGPSSSGPANSTG-TGNTVGPSNSQPSTPS WD 3 475-513 -FG-DVGALEDNVESFLSQDDGDGG-SLFGTLKRNSSVHTET WD 4 519-557 -FN-EVSCIRKSASKVICCSFSYDG-KLLASAGHDKKVFIWN WD 5 561-599 -LQ-VESTPEEHAHIITDVRFRPNS-TQLATSSFDKTIKIWD WD 6 604-643 -GY-FLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWD WD 7 646-681 -AS-CVRAVKGA---STQVRFQPRT-GQFLAAASENTVSIFD WD 8 687-723 --K-RVNIFKGHSSNVHSVCWSPNG-ELVASVSED-AVKLWS WD 9 727-765 -GD-CIHELSNSGNKFHSVVFHPSY-PDLLVIGGYQAIELWN WD10 766-806 TMENKCMTVAGHECVISALAQSPST-GVVASASHDKSVKIWK WD40 Template TGE-CLRTLSGHTSGVTSVSFSPDG-KRLVSGSEDGTIKVWD |
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