Input parameters:

  Query = AT2G32950.1 (Len=675)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G32950.1, Len=675):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEISTDPVVPAVKPDPRTSSVGEGANRHENDDGGSGGSEIGAPDLDKDLLCPICMQIIKDAFLTACGHSFCYMCIITHL 80  
WD40-rpts                                                                                      

Query       81 RNKSDCPCCSQHLTNNQLYPNFLLDKLLKKTSARHVSKTASPLDQFREALQRGCDVSIKEVDNLLTLLAERKRKMEQEEA 160 
WD40-rpts                                                                                      

Query      161 ERNMQILLDFLHCLRKQKVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAWPHEKNQIGFN 240 
WD40-rpts                                                                                      

Query      241 SNSLSIRGGNFVGNYQNKKVEGKAQGSSHGLPKKDALSGSDSQSLNQSTVSMARKKRIHAQFNDLQECYLQKRRQLADQP 320 
WD40-rpts                                                                                      

Query      321 NSKQENDKSVVRREGYSNGLADFQSVLTTFTRYSRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDF 400 
WD40-rpts                                                  (_______________WD 1______________) 

Query      401 SSVVNEPADMQCPIVEMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEPSMLV 480 
WD40-rpts               (_________________WD 2_________________)   (_________________WD 3______

Query      481 SGSDDCKVKVWCTRQEASVINIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLRNISQPLHVFSGHKKAVSYVKFLSN 560 
WD40-rpts      ___________)   (_________________WD 4________________)    (________________WD 5_

Query      561 NELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEE 640 
WD40-rpts      _______________)   (_________________WD 6________________)               (______

Query      641 EAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 675 
WD40-rpts      ___________WD 7________________)   

7 WD40-repeats found in QUERY=AT2G32950.1 (Len=675):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   365-399      6.81  396.06  0.00029       20.0%     46.73
  WD 2:  Seg  7   410-449      6.50  383.08  0.00043       20.0%     50.99
  WD 3:  Seg 11   453-492      8.24  454.83  4.6e-05       37.5%     52.84
  WD 4:  Seg 15   496-534      5.56  344.27  0.00143       17.5%     54.87
  WD 5:  Seg 18   539-576      7.77  435.80  8.3e-05       35.0%     43.34
  WD 6:  Seg 22   580-618      8.50  465.83  3.3e-05       27.5%     53.70
  WD 7:  Seg 26   634-672      5.96  361.06  0.00085       17.5%     44.10

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  365-399    ----GDIFHSANIVSSIEFD-R-DDELFATAGVSRCIKVFD
   WD 2  410-449    MQCPIVEMSTRSKLSCLSWN-KHEKNHIASSDYEGIVTVWD
   WD 3  453-492    RQSLMEYEEHEKRAWSVDFSRT-EPSMLVSGSDDCKVKVWC
   WD 4  496-534    EASVINIDMKAN-ICCVKYN-PGSSNYIAVGSADHHIHYYD
   WD 5  539-576    SQPLHVFSGHKKAVSYVKFL-S-NNE-LASASTDSTLRLWD
   WD 6  580-618    NLPVRTFRGHTNEKNFVGLT-V-NSEYLACGSETNEVYVYH
   WD 7  634-672    DMDDAEEEAGSYFISAVCWK-S-DSPTMLTANSQGTIKVLV

   WD40 Template    GECLRTLSGHTSGVTSVSFS-P-DGKRLVSGSEDGTIKVWD