Input parameters:

  Query = AT2G33340.1 (Len=525)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G33340.1, Len=525):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNCAISGEVPVEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDIVPIKTGEIIKPKTLHTASIPGLLGTFQNEW 80  
WD40-rpts                                                                                      

Query       81 DGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKKERDEARQLLAEVERHIPAAPEAVTANAALSNGKRAAVDEE 160 
WD40-rpts                                                                                      

Query      161 LGPDAKKLCPGISAEIITELTDCNAALSQKRKKRQIPQTLASIDTLERFTQLSSHPLHKTNKPGICSMDILHSKDVIATG 240 
WD40-rpts                                                      (__________________WD 1_________

Query      241 GVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTVHPT 320 
WD40-rpts      _________)   (_________________WD 2________________)        (________________WD 

Query      321 NKYFVSASLDGTWCFYDLSSGSCLAQVSDDSKNVDYTAAAFHPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTA 400 
WD40-rpts      3_______________)   (__________________WD 4_________________)   (_______________

Query      401 ISFSENGYFLATAAEDGVRLWDLRKLRNFKSFLSADANSVEFDPSGSYLGIAASDIKVYQTASVKAEWNLIKTLPDLSGT 480 
WD40-rpts      _WD 5________________)(________________WD 6________________)          (_________

Query      481 GKATCVKFGSDAQYVAVGSMDRNLRIFGLPGDEKANVDDDSAQDS 525 
WD40-rpts      _______WD 7________________)                 

7 WD40-repeats found in QUERY=AT2G33340.1 (Len=525):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   209-250      7.16  410.59  0.00018       15.0%     46.77
  WD 2:  Seg  6   254-292     10.11  532.31  4.2e-06       40.0%     56.61
  WD 3:  Seg 11   301-337      8.82  478.99  2.2e-05       37.5%     46.96
  WD 4:  Seg 14   341-381      8.51  466.06  3.3e-05       37.5%     54.31
  WD 5:  Seg 18   385-422      8.31  458.12  4.2e-05       37.5%     44.95
  WD 6:  Seg 21   423-460      6.57  386.07  0.00039       27.5%     45.56
  WD 7:  Seg 26   471-508      7.27  415.10  0.00016       20.0%     45.24

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  209-250    FTQLSSHPLHKTNKPGI--CSMDILHSKDVIATGGVDATAVLFD
   WD 2  254-292    -GQILS--TLTGHSKKV--TSVKFVGDSDLVLTASADKTVRIWR
   WD 3  301-337    ---CGY--TLNDHSAEV--RAVTVHPTNKYFVSASLDGTWCFYD
   WD 4  341-381    -GSCLA--QVSDDSKNVDYTAAAFHPDGLILGTGTSQSVVKIWD
   WD 5  385-422    -QANVA--KFDGHTGEV--TAISFSENGYFLATAAEDG-VRLWD
   WD 6  423-460    LRKLRN--FKSFLSADA--NSVEFDPSGSYLGIAASD--IKVYQ
   WD 7  471-508    IKTL----PDLSGTGKA--TCVKFGSDAQYVAVGSMDRNLRIFG

   WD40 Template    TGECLR--TLSGHTSGV--TSVSFSPDGKRLVSGSEDGTIKVWD