Input parameters:

  Query = AT2G33340.2 (Len=525)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G33340.2, Len=525):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNCAISGEVPVEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDIVPIKTGEIIKPKTLHTASIPGLLGTFQNEW 80  
WD40-rpts                                                                                      

Query       81 DGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKKERDEARQLLAEVERHIPAAPEAVTANAALSNGKRAAVDEE 160 
WD40-rpts                                                                          (___________

Query      161 LGPDAKKLCPGISAEIITELTDCNAALSQKRKKRQIPQTLASIDTLERFTQLSSHPLHKTNKPGICSMDILHSKDVIATG 240 
WD40-rpts      __________________WD 1____________________________)(_________________WD 2_______

Query      241 GVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTVHPT 320 
WD40-rpts      _________)   (_________________WD 3________________)      (_________________WD 4

Query      321 NKYFVSASLDGTWCFYDLSSGSCLAQVSDDSKNVDYTAAAFHPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTA 400 
WD40-rpts      ________________)   (__________________WD 5_________________)   (_______________

Query      401 ISFSENGYFLATAAEDGVRLWDLRKLRNFKSFLSADANSVEFDPSGSYLGIAASDIKVYQTASVKAEWNLIKTLPDLSGT 480 
WD40-rpts      _WD 6________________)(________________WD 7________________)            (_______

Query      481 GKATCVKFGSDAQYVAVGSMDRNLRIFGLPGDEKANVDDDSAQDS 525 
WD40-rpts      ________WD 8_______________)                 

8 WD40-repeats found in QUERY=AT2G33340.2 (Len=525):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   149-211      4.57  303.24  0.00509       20.0%     17.31
  WD 2:  Seg  6   212-250      7.28  415.33  0.00016       15.0%     49.22
  WD 3:  Seg  9   254-292     10.16  534.50  3.9e-06       40.0%     57.54
  WD 4:  Seg 13   299-337      8.78  477.38  2.3e-05       37.5%     52.95
  WD 5:  Seg 17   341-381      8.55  467.94  3.1e-05       37.5%     56.34
  WD 6:  Seg 21   385-422      8.36  459.90  3.9e-05       37.5%     48.45
  WD 7:  Seg 25   423-460      6.05  364.68  0.00076       27.5%     46.75
  WD 8:  Seg 30   473-508      7.44  421.94  0.00013       25.0%     44.76

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  149-211    -------LSNGKRAA--VDEELGPDAKKLCPGISAEIITELTDCNAALSQKRKKRQIPQTLASIDTLERFTQ
   WD 2  212-250    L-SSHPLHKTNKPGI--CSMDILHSKDVIATGGV------------------------------DATAVLFD
   WD 3  254-292    -GQILSTLTGHSKKV--TSVKFVGDSDLVLTASA------------------------------DKTVRIWR
   WD 4  299-337    -YACGYTLNDHSAEV--RAVTVHPTNKYFVSASL------------------------------DGTWCFYD
   WD 5  341-381    -GSCLAQVSDDSKNVDYTAAAFHPDGLILGTGTS------------------------------QSVVKIWD
   WD 6  385-422    -QANVAKFDGHTGEV--TAISFSENGYFLATAAE------------------------------DG-VRLWD
   WD 7  423-460    LRKLRNFKSFLSADA--NSVEFDPSGSYLGIAAS------------------------------D--IKVYQ
   WD 8  473-508    TLPDL----SGTGKA--TCVKFGSDAQYVAVGSM------------------------------DRNLRIFG

   WD40 Template    TGECLRTLSGHTSGV--TSVSFSPDGKRLVSGSE------------------------------DGTIKVWD