Input parameters:

  Query = AT2G33340.3 (Len=485)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G33340.3, Len=485):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNCAISGEVPVEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDIVPIKTGEIIKPKTLHTASIPGLLGTFQNEW 80  
WD40-rpts                                                                                      

Query       81 DGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKKERDEARQLLAEVERHIPAAPEAVTANAALSNGKRAAVDEE 160 
WD40-rpts                                                                     (________________

Query      161 LGPDAKKLCPGISAEIITELTDCNAALSQKRKKRQIPQTLASIDTLERFTQLSSHPLHKTNKPGICSMDILHSKDVIATG 240 
WD40-rpts      _____WD 1____________________)____________________________WD 2__________________

Query      241 GVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTVHPT 320 
WD40-rpts      _________)   (_________________WD 3________________)      (_________________WD 4

Query      321 NKYFVSASLDGTWCFYDLSSGSCLAQVSDDSKNVDYTAAAFHPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTA 400 
WD40-rpts      ________________)   (__________________WD 5_________________)   (_______________

Query      401 ISFSENGYFLATAAEDGVRLWDLRKLRNFKSFLSADANSVEFDPSGSYLGIAASDIKVYQTASVKAEWNLIKTLPDLSGT 480 
WD40-rpts      _WD 6________________)(________________WD 7________________)                    

Query      481 GKLRV 485 
WD40-rpts           

7 WD40-repeats found in QUERY=AT2G33340.3 (Len=485):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   144-190      5.41  338.01  0.00173       22.5%     17.70
  WD 2:  Seg  5   190-250      5.88  357.58  0.00094       15.0%     45.12
  WD 3:  Seg  8   254-292     10.16  534.43  3.9e-06       40.0%     57.05
  WD 4:  Seg 12   299-337      8.77  477.06  2.3e-05       37.5%     54.39
  WD 5:  Seg 16   341-381      8.57  468.70  3.0e-05       37.5%     54.79
  WD 6:  Seg 20   385-422      8.46  464.22  3.4e-05       37.5%     52.78
  WD 7:  Seg 24   423-460      6.09  366.38  0.00072       27.5%     46.22

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  144-190    T--ANA---------------------ALSNGKRAA--VDEELGPDAKKLCPGISAEIITELTDCNAALSQK
   WD 2  190-250    KRKKRQIPQTLASIDTLERFTQLSSHPLHKTNKPGI--CSMDILHSKDVIATGGVDATA----VLF-----D
   WD 3  254-292    -GQILS---------------------TLTGHSKKV--TSVKFVGDSDLVLTASADKTV----RIW-----R
   WD 4  299-337    -YACGY---------------------TLNDHSAEV--RAVTVHPTNKYFVSASLDGTW----CFY-----D
   WD 5  341-381    -GSCLA---------------------QVSDDSKNVDYTAAAFHPDGLILGTGTSQSVV----KIW-----D
   WD 6  385-422    -QANVA---------------------KFDGHTGEV--TAISFSENGYFLATAAEDG-V----RLW-----D
   WD 7  423-460    LRKLRN---------------------FKSFLSADA--NSVEFDPSGSYLGIAASD--I----KVY-----Q

   WD40 Template    TGECLR---------------------TLSGHTSGV--TSVSFSPDGKRLVSGSEDGTI----KVW-----D