Input parameters:

  Query = AT2G34260.1 (Len=353)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G34260.1, Len=353):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEIDLGANAFGIDFHPSTNLVAAGLIDGHLHLYRYDSDSSLVRERKVRAHKESCRAVRFIDDGQRIVTASADCSILATDV 80  
WD40-rpts      (______________WD 1______________)(____________________WD 2___________________) 

Query       81 ETGAQVAHLENAHEDAVNTLINVTETTIASGDDKGCVKIWDTRQRSCSHEFNAHEDYISGMTFASDSMKLVVTSGDGTLS 160 
WD40-rpts        (_________________WD 3________________)   (_________________WD 4______________

Query      161 VCNLRTSKVQSQSEFSEDELLSVVIMKNGRKVICGTQNGTLLLYSWGFFKDCSDRFVDLAPNSVDALLKLDEDRLITGCD 240 
WD40-rpts      __)   (_________________WD 5________________)(___________________WD 6___________

Query      241 NGIISLVGILPNRIIQPIGSHDYPIEDLALSHDKKFLGSTAHDSMLKLWNLEEILEGSNVNSGNASGAAEDSDSDNDGMD 320 
WD40-rpts      _______)   (_________________WD 7________________)(___________________WD 8______

Query      321 LDNDPSKSSKGSKRKTKSKANTLNATNNFFADL 353 
WD40-rpts      ____________)                    

8 WD40-repeats found in QUERY=AT2G34260.1 (Len=353):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-34       6.72  392.39  0.00032       12.5%     43.72
  WD 2:  Seg  4    35-79       8.70  473.88  2.6e-05       30.0%     49.40
  WD 3:  Seg  8    83-121      9.16  493.04  1.4e-05       20.0%     55.71
  WD 4:  Seg 12   125-163      9.67  514.24  7.3e-06       27.5%     57.30
  WD 5:  Seg 16   167-205      8.90  482.47  2.0e-05       15.0%     54.87
  WD 6:  Seg 20   206-248      8.42  462.46  3.6e-05       20.0%     54.78
  WD 7:  Seg 24   252-290      9.29  498.30  1.2e-05       22.5%     57.68
  WD 8:  Seg 28   291-333      7.43  421.64  0.00013       22.5%     44.13

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-34     -----------------MEIDLGANAFGIDFHPSTNLVAAGLIDGHLHLYR
   WD 2   35-79     YD---SDSSLVRE---RKVRAHKESCRAVRFIDDGQRIVTASADCSILATD
   WD 3   83-121    -G---A-----QV---AHLENAHEDAVNTLINVTETTIASGDDKGCVKIWD
   WD 4  125-163    -R---S-----CS---HEFNAHEDYISGMTFASDSMKLVVTSGDGTLSVCN
   WD 5  167-205    -S---K-----VQ---SQSEFSEDELLSVVIMKNGRKVICGTQNGTLLLYS
   WD 6  206-248    WGFFKD-----CS---DRFVDLAPNSVDALLKLDEDRLITGCDNGIISLVG
   WD 7  252-290    -N---R-----II---QPIGSHDYPIEDLALSHDKKFLGSTAHDSMLKLWN
   WD 8  291-333    LE---E-----ILEGSNVNSGNASGAAEDSDSDNDGMDLDNDPSKSSKGSK

   WD40 Template    TG---E-----CL---RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD