Input parameters:

  Query = AT2G34260.2 (Len=296)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G34260.2, Len=296):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFFCWVLGIVTASADCSILATDVETGAQVAHLENAHEDAVNTLINVTETTIASGDDKGCVKIWDTRQRSCSHEFNAHEDY 80  
WD40-rpts                               (_________________WD 1________________)   (____________

Query       81 ISGMTFASDSMKLVVTSGDGTLSVCNLRTSKVQSQSEFSEDELLSVVIMKNGRKVICGTQNGTLLLYSWGFFKDCSDRFV 160 
WD40-rpts      _____WD 2________________)   (_________________WD 3________________)(___________

Query      161 DLAPNSVDALLKLDEDRLITGCDNGIISLVGILPNRIIQPIGSHDYPIEDLALSHDKKFLGSTAHDSMLKLWNLEEILEG 240 
WD40-rpts      ________WD 4__________________)   (_________________WD 5________________)(______

Query      241 SNVNSGNASGAAEDSDSDNDGMDLDNDPSKSSKGSKRKTKSKANTLNATNNFFADL 296 
WD40-rpts      _____________WD 6__________________)                    

6 WD40-repeats found in QUERY=AT2G34260.2 (Len=296):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    26-64       9.12  491.51  1.5e-05       20.0%     56.32
  WD 2:  Seg  7    68-106      9.76  517.85  6.5e-06       27.5%     57.02
  WD 3:  Seg 11   110-148      9.03  487.66  1.7e-05       15.0%     55.42
  WD 4:  Seg 15   149-191      8.36  459.79  4.0e-05       20.0%     56.45
  WD 5:  Seg 19   195-233      9.43  504.12  1.0e-05       22.5%     58.77
  WD 6:  Seg 23   234-276      6.41  379.30  0.00048       22.5%     38.24

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   26-64     -G---AQV---AHLENAHEDAVNTLINVTETTIASGDDKGCVKIWD
   WD 2   68-106    -R---SCS---HEFNAHEDYISGMTFASDSMKLVVTSGDGTLSVCN
   WD 3  110-148    -S---KVQ---SQSEFSEDELLSVVIMKNGRKVICGTQNGTLLLYS
   WD 4  149-191    WGFFKDCS---DRFVDLAPNSVDALLKLDEDRLITGCDNGIISLVG
   WD 5  195-233    -N---RII---QPIGSHDYPIEDLALSHDKKFLGSTAHDSMLKLWN
   WD 6  234-276    LE---EILEGSNVNSGNASGAAEDSDSDNDGMDLDNDPSKSSKGSK

   WD40 Template    TG---ECL---RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD