Input parameters:

  Query = AT2G37160.1 (Len=544)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G37160.1, Len=544):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMNTSNGMISGPSSSSASAANPQSPGIKTYFKTPEGKYKLHYEKTHPSGLLHYTHGKTVTQVTLAHLKDKPAPSTPTGTS 80  
WD40-rpts      (______________WD 1_____________)_________________WD 2_________________)        

Query       81 SSSTASSGFRSATARLLGGGNGNRALSFVGGNGGAKNVGASSRIGASFAASSSNTSATNTNFDGKGTYLVFNVGDAIFIS 160 
WD40-rpts                                              (__________________WD 3_________________

Query      161 DLNSQDKDPVKSIHISNSNPMCHAFHPDAKDGHDLLIGLNSGDVYTVSLRQQLQDVGKKLVSAQHYNKDGSVNNSRCTSI 240 
WD40-rpts      )     (__________________WD 4__________________)               (________________

Query      241 AWVPGGDGSFVAAHADGNLYVYEKNKEGATDSSFSAIRDPTQFSVDKAKYSKSNPVARWHIGQGAINSIAFSNDGAYLAT 320 
WD40-rpts      _WD 5_________________)                      (____________________WD 6__________

Query      321 VGRDGYLRIFDFSTQKLVCGVKSYYGALLCCAWSMDGKYLLTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWS 400 
WD40-rpts      __________)   (_________________WD 7________________)   (_______________________

Query      401 SPNSEGSGENVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSTGSQSAHWDNIVPMGTLQPAPCMRDVPKLSP 480 
WD40-rpts      WD 8_______________________)   (___________________WD 9__________________)   (__

Query      481 VVAHRVHTEPLSGLIFTQESLITACREGHLKIWTRPDTQPSSSSEATNPTTSKPSLTSKVGGSS 544 
WD40-rpts      ______________WD10_______________)                              

10 WD40-repeats found in QUERY=AT2G37160.1 (Len=544):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-33       3.09  242.35  0.03323       10.0%     -2.54
  WD 2:  Seg  2    33-72       2.94  236.15  0.04014       12.5%     13.22
  WD 3:  Seg  6   121-161      6.00  362.40  0.00081       22.5%     51.44
  WD 4:  Seg 10   167-208      6.88  398.69  0.00026       20.0%     52.29
  WD 5:  Seg 14   224-263      7.13  409.05  0.00019       25.0%     49.68
  WD 6:  Seg 19   286-331      8.08  448.56  5.6e-05       22.5%     55.89
  WD 7:  Seg 23   335-373      9.34  500.61  1.1e-05       25.0%     58.03
  WD 8:  Seg 27   377-428      6.93  400.82  0.00025       27.5%     57.63
  WD 9:  Seg 31   432-474      5.69  349.58  0.00121       15.0%     30.10
  WD10:  Seg 34   478-514      6.75  393.65  0.00031       17.5%     50.89

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-33     ---------------MMNTSNGM----ISGPSSSS---AS-------------AANPQSPGIKTYFKT
   WD 2   33-72     TP------E--GKYKLHYEKTHP----SGLLHYTH---GK-------------TVTQVTLAHLKDKPA
   WD 3  121-161    SS------RIGASFAASSSNTSA----TNTNFDGK---GT-------------YLVFNVGD-AIFISD
   WD 4  167-208    -K------D--PVKSIHISNSNP----MCHAFHPDAKDGH-------------DLLIGLNSGDVYTVS
   WD 5  224-263    -Q------H--YNKDGSVNNSRC----TSIAWVPG---GD------------GSFVAAHADGNLYVYE
   WD 6  286-331    DKAKYSKSN--PVARWHIGQGAI----NSIAFSND---GA-------------YLATVGRDGYLRIFD
   WD 7  335-373    -Q------K--LVCGVKSYYGAL----LCCAWSMD---GK-------------YLLTGGEDDLVQVWS
   WD 8  377-428    -R------K--VVAWGEGHNSWV----SGVAFDSY---WSSPNSEGSGENVMYRFGSVGQDTQLLLWD
   WD 9  432-474    -D------E--IVVPLRRPPGGSPTYSTGSQSAHW---DN-------------IVPMGTLQPAPCMRD
   WD10  478-514    -L------S--PVVAHRVHTEPL----SGLIFTQE---S---------------LITACREGHLKIWT

   WD40 Template    TG------E--CLRTLSGHTSGV----TSVSFSPD---GK-------------RLVSGSEDGTIKVWD