Input parameters:

  Query = AT2G37160.2 (Len=573)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G37160.2, Len=573):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMNTSNGMISGPSSSSASAANPQSPGIKTYFKTPEGKYKLHYEKTHPSGLLHYTHGKTVTQVLCKNIKCTFHFYVLKVVS 80  
WD40-rpts                                                 (__________________WD 1______________

Query       81 ENGFVKFWCQVTLAHLKDKPAPSTPTGTSSSSTASSGFRSATARLLGGGNGNRALSFVGGNGGAKNVGASSRIGASFAAS 160 
WD40-rpts      ___)(___________________WD 2__________________)(___________________WD 3_________

Query      161 SSNTSATNTNFDGKGTYLVFNVGDAIFISDLNSQDKDPVKSIHISNSNPMCHAFHPDAKDGHDLLIGLNSGDVYTVSLRQ 240 
WD40-rpts      _________)                         (__________________WD 4__________________)   

Query      241 QLQDVGKKLVSAQHYNKDGSVNNSRCTSIAWVPGGDGSFVAAHADGNLYVYEKNKEGATDSSFSAIRDPTQFSVDKAKYS 320 
WD40-rpts                  (_________________WD 5_________________)                      (_____

Query      321 KSNPVARWHIGQGAINSIAFSNDGAYLATVGRDGYLRIFDFSTQKLVCGVKSYYGALLCCAWSMDGKYLLTGGEDDLVQV 400 
WD40-rpts      _______________WD 6____________________)   (_________________WD 7_______________

Query      401 WSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSEGSGENVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSTG 480 
WD40-rpts      _)   (_______________________WD 8_______________________)   (___________________

Query      481 SQSAHWDNIVPMGTLQPAPCMRDVPKLSPVVAHRVHTEPLSGLIFTQESLITACREGHLKIWTRPDTQPSSSSEATNPTT 560 
WD40-rpts      WD 9__________________)   (________________WD10_______________)                 

Query      561 SKPSLTSKVGGSS 573 
WD40-rpts                   

10 WD40-repeats found in QUERY=AT2G37160.2 (Len=573):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    44-84       5.32  334.33  0.00194       12.5%     29.92
  WD 2:  Seg  6    85-127      5.12  326.22  0.00250        7.5%     18.54
  WD 3:  Seg  9   128-170      7.28  415.55  0.00016       15.0%     53.61
  WD 4:  Seg 15   196-237      6.66  389.79  0.00035       20.0%     51.79
  WD 5:  Seg 19   253-292      7.00  403.69  0.00023       25.0%     46.37
  WD 6:  Seg 24   315-360      7.93  442.43  6.8e-05       22.5%     55.67
  WD 7:  Seg 28   364-402      9.24  496.49  1.3e-05       25.0%     57.76
  WD 8:  Seg 32   406-457      6.44  380.85  0.00046       27.5%     56.50
  WD 9:  Seg 36   461-503      5.54  343.51  0.00146       15.0%     20.80
  WD10:  Seg 39   507-543      7.06  406.10  0.00021       17.5%     51.75

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   44-84     KT------HPSGLLHYTHGKTV----TQVLCKNI---KC-------------TFHFYVLKVVSENGF
   WD 2   85-127    VK---FWCQVTLAHL-KDKPAP----STPTGTSS---SS-------------TASSGFRSATARLLG
   WD 3  128-170    GG---NGNRALSFVG-GNGGAK----NVGASSRI---GA-------------SFAASSSNTSATNTN
   WD 4  196-237    -K------DPVKSIH-ISNSNP----MCHAFHPDAKDGH-------------DLLIGLNSGDVYTVS
   WD 5  253-292    -Q------HYNKDGS-VNNSRC----TSIAWVPG---GD------------GSFVAAHADGNLYVYE
   WD 6  315-360    DKAKYSKSNPVARWH-IGQGAI----NSIAFSND---GA-------------YLATVGRDGYLRIFD
   WD 7  364-402    -Q------KLVCGVK-SYYGAL----LCCAWSMD---GK-------------YLLTGGEDDLVQVWS
   WD 8  406-457    -R------KVVAWGE-GHNSWV----SGVAFDSY---WSSPNSEGSGENVMYRFGSVGQDTQLLLWD
   WD 9  461-503    -D------EIVVPLR-RPPGGSPTYSTGSQSAHW---DN-------------IVPMGTLQPAPCMRD
   WD10  507-543    -L------SPVVAHR-VHTEPL----SGLIFTQE---S---------------LITACREGHLKIWT

   WD40 Template    TG------ECLRTLS-GHTSGV----TSVSFSPD---GK-------------RLVSGSEDGTIKVWD