Input parameters:

  Query = AT2G37670.1 (Len=903)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G37670.1, Len=903):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEDGNKLDRKKTMTMNWEGLGDFEDEDDDRFFETHDRLSSALTFDMANASSSDEDEDFDDCRLSFSSAVSSLTTASRKFR 80  
WD40-rpts         (_________________WD 1_________________)                                     

Query       81 TPAMSPDYDIWMAAPGSISERRRRLLHGMGLASNKDMVSAVSIRRVVSNAPVVSNGEEKKMKKKMNHEVDEQDHDHVPVM 160 
WD40-rpts                                                                                      

Query      161 LARSRSESDIERFLIEKRRKEEILGKISKQRLTRTYSTICPTRTRICQYQTPIRQTPAVCGNGKALRGGGEALTSVMSNA 240 
WD40-rpts                                              (_________________WD 2________________) 

Query      241 RVGAFFLIKNLDTGKEFIVNEYDEDGMWNRLSDLQTGKQLTLEEFEKCVGYSPVVKELMRRENVNRINYEPLMDLRKFNS 320 
WD40-rpts                                       (________________WD 3________________)         

Query      321 YLSKSVRLSKRRGAALLKNIKGVAHSMSLRVADKDVSDGSTDSPKKGKDHKHGKANEWVKVRPTGKSYKELSALHMCQEI 400 
WD40-rpts                (_________________WD 4________________)                        (______

Query      401 QAHEGAVWTIKFSQDAHYLASGGADRVIHVWEVQECELMSMNEGSLTPIHPSLCDSSGNEITVVEKKKKGKGSSGRRHNH 480 
WD40-rpts      ___________WD 5________________)   (_________________WD 6________________)      

Query      481 IPDYVHVPETVFSFSDKPVCSLKGHLDAILDLSWSKSQLLLSSSMDKTVRLWDIETKTCLKLFAHNDYVTCIQFSPVDEN 560 
WD40-rpts                     (________________WD 7________________)  (_________________WD 8___

Query      561 YFLSGSLDAKIRIWSIQDRHVVEWSDLHEMVTAACYTPDGQGALIGSHKGICRAYDTEDCKLSQTNQIDVQSNKKSQAKR 640 
WD40-rpts      ______________)   (________________WD 9________________)              (_________

Query      641 KITSFQFSPVNPSEVLVTSADSRIRILDGSEVIHKFKGFRNTCSQLSASYSQDGKYIICASEDSQVYLWKNDFHRTRSTL 720 
WD40-rpts      _______WD10________________)(__________________WD11__________________)   (______

Query      721 TTQSHEHFHCKDVSAAVPWHGHVRGEPPPVQIHSKRHSKRISTSSQPSSTISSPTKEETSATGPTTSNRNKKSGLPPMPK 800 
WD40-rpts      ____________WD12_________________)   (_________________WD13________________)    

Query      801 KAATKSQIQPEEEAGPELGSSESFRSSMNSSEQHSSRFGESPSINTSSRLSSWSWFDSGGHGPQTIQPTAWGMVIVTATV 880 
WD40-rpts                                                                                      

Query      881 HGEIRSYQNFGLPRRIGRQTTLF 903 
WD40-rpts                             

13 WD40-repeats found in QUERY=AT2G37670.1 (Len=903):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-43       7.13  409.08  0.00019        7.5%     13.13
  WD 2:  Seg  5   201-239      7.21  412.66  0.00017       20.0%     35.46
  WD 3:  Seg 11   274-311      3.94  277.34  0.01134       15.0%     20.54
  WD 4:  Seg 15   331-369      6.19  370.44  0.00063       22.5%     27.90
  WD 5:  Seg 18   394-432      8.65  471.87  2.7e-05       30.0%     45.87
  WD 6:  Seg 21   436-474      7.24  413.65  0.00017       10.0%     45.33
  WD 7:  Seg 24   496-533      6.14  368.32  0.00068       30.0%     52.89
  WD 8:  Seg 28   536-575      7.78  435.96  8.3e-05       35.0%     53.15
  WD 9:  Seg 32   579-616      6.85  397.68  0.00027       25.0%     57.68
  WD10:  Seg 37   631-668      6.48  382.16  0.00044       25.0%     47.67
  WD11:  Seg 40   669-710      8.69  473.54  2.6e-05       32.5%     52.57
  WD12:  Seg 44   714-754      3.07  241.53  0.03408        7.5%     24.49
  WD13:  Seg 47   758-796      4.97  320.07  0.00302       12.5%     -5.11

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-43     GNKLDRKKTMT--MNWEGLGD--FED-EDDDRFFETHDRLSSALT
   WD 2  201-239    -PTRTRICQYQ--TPIRQTPA--VCG-NGKALRGGGEALTSVMSN
   WD 3  274-311    LQ--TGKQLTL--EEFEKCVG--YSP-VVKELMRRENVNRINYEP
   WD 4  331-369    -RRGAALLKNI--KGVAHSMS--LRV-ADKDVSDGSTDSPKKGKD
   WD 5  394-432    -LHMCQEIQAH--EGAVWTIK--FSQ-DAHYLASGGADRVIHVWE
   WD 6  436-474    -CELMSMNEGS--LTPIHPSL--CDS-SGNEITVVEKKKKGKGSS
   WD 7  496-533    -DKPVCSLKGH--LDAILDLS--WS--KSQLLLSSSMDKTVRLWD
   WD 8  536-575    -TKTCLKLFAH--NDYVTCIQ--FSPVDENYFLSGSLDAKIRIWS
   WD 9  579-616    -RHVVEWSDLH--EM-VTAAC--YTP-DGQGALIGSHKGICRAYD
   WD10  631-668    QSN---KKSQA--KRKITSFQ--FSPVNPSEVLVTSADSRIRILD
   WD11  669-710    GSEVIHKFKGFRNTCSQLSAS--YSQ-DGKYIICASEDSQVYLWK
   WD12  714-754    -HRTRSTLTTQ--SHEHFHCKDVSAA-VPWHGHVRGEPPPVQIHS
   WD13  758-796    -SKRISTSSQP--SSTISSPT--KEE-TSATGPTTSNRNKKSGLP

   WD40 Template    TGECLRTLSGH--TSGVTSVS--FSP-DGKRLVSGSEDGTIKVWD