Input parameters:

  Query = AT2G38630.1 (Len=467)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G38630.1, Len=467):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMEGRRIIANPRPCSGSRRVIAKKRSRPDGFVNSVKKLQRREISSRMDRAFSISTAQERFRNMRLVEQYDTHDPKGYCLV 80  
WD40-rpts                                                                                      

Query       81 SLPNLLKRSKVIEIVAARDIVFALTLSGVCASFSRETNKKVCFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNYSSLKC 160 
WD40-rpts                                                                                      

Query      161 RSTRIEYILRGQADAGFPLFESESLKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYALLYSISDKNVQEIKISPGIML 240 
WD40-rpts                     (_________________WD 1________________)(__________________WD 2___

Query      241 LIFKRAASHVPLKILSIEDGTLLKSFHHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELIEVSRTDFMTPSAFI 320 
WD40-rpts      _______________)   (_________________WD 3_________________)  (_________________W

Query      321 FLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADTEDQWIEGNAGSINISNILT 400 
WD40-rpts      D 4________________)  (___________________WD 5___________________)              

Query      401 GKCLAKIKANNGPPKEEDCSSSDLGNSSRRRSAVAEALEDITALFYDEERNEIYTGNRHGLLHVWSN 467 
WD40-rpts      (______________________________WD 6______________________________) 

6 WD40-repeats found in QUERY=AT2G38630.1 (Len=467):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   176-214      4.41  296.99  0.00618       22.5%     35.99
  WD 2:  Seg 10   215-256      4.71  309.39  0.00421       15.0%     44.11
  WD 3:  Seg 14   260-299      3.83  272.98  0.01297       15.0%     27.37
  WD 4:  Seg 17   302-340      7.41  420.86  0.00013       10.0%     44.33
  WD 5:  Seg 21   343-386      4.16  286.52  0.00854       17.5%     28.73
  WD 6:  Seg 24   401-466      5.39  337.33  0.00177       20.0%     22.98

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  176-214    -GFP-----------------LFESESLK-----WP----------GFVEFDDVN------GKVLTYSAQDSV--YKVFD
   WD 2  215-256    LKNY-----------------ALLYSISD-----KN----------VQEIKISPG------IMLLIFKRAASHVPLKILS
   WD 3  260-299    -GTL-----------------LKSFHHLL-----HR----------NKKV-----DFIEQFNEKLLVKQENEN--LQILD
   WD 4  302-340    NAEL-----------------IEVSRTDF-----MT----------PSAFIFLYE------NQLFLTFR-NRN--VSVWN
   WD 5  343-386    -GEL-----------------VTSFEDHLLWHPDCN----------TNNIYITSD------QDLIISYCKADT--EDQWI
   WD 6  401-466    -GKCLAKIKANNGPPKEEDCSSSDLGNSS-----RRRSAVAEALEDITALFYDEE------RNEIYTGNRHGL--LHVWS

   WD40 Template    TGEC-----------------LRTLSGHT-----SG----------VTSVSFSPD------GKRLVSGSEDGT--IKVWD