Input parameters:

  Query = AT2G40360.1 (Len=753)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G40360.1, Len=753):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTKRSKGANEDKLIETKSKNVSGKSQKQKKPVEAESLKEEDLLQASGTDSDYDGDSLPGSLNSDDFDSDFSDSEDDGTHE 80  
WD40-rpts                                                                                      

Query       81 GTEDGDVEFSDDDDVLEHDGSIDNEDDDGSEHVGSDNNEEHGSDEDSERGEAVEESDSSEDEVPSRNTVGNVPLKWYEDE 160 
WD40-rpts                                                                                      

Query      161 KHIGYDLTGKKITKKEKQDKLDSFLATIDDSKTWRKIYDEYNDEDVELTKEESKIVQRILKGEAPHADFDPYAPYVEWFK 240 
WD40-rpts                                                                                      

Query      241 HDDAIHPLSSAPEPKRRFIPSKWEAKKVVKIVRAIRKGWIKFDKPEEEPNVYLLWGDDSTSDQKSKHLTYIPPPKLKLPG 320 
WD40-rpts                                                                                      

Query      321 HDESYNPSLEYIPTEEEKASYELMFEEDRPKFIPTRFTSLRSIPAYENALKESFERCLDLYLCPRVRKKRINIDPESLKP 400 
WD40-rpts                                                                                      

Query      401 KLPSRKDLRPYPNSCYLEYKGHTGAVTSISTDSSGEWIASGSTDGSVRMWEVETGRCLKVWQFDEAIMCVAWNPLSRLPV 480 
WD40-rpts                         (_____________WD 1_____________)                             

Query      481 LAVAMGRDLFFLNTELGTDEEQEITKERLHSGNIPEPDASVAAIVTWLPDELYGGIKIRHFKSISSIDWHRKGDYLSTVM 560 
WD40-rpts                                                         (__________________WD 2______

Query      561 ASGETRGVVLHQLSKQKTQRLPFKIRGLPVCTLFHPSLSYFFVATRKDVRVYNLLKPGEATKKLETGLREISSMAIHPGG 640 
WD40-rpts      ___________)   (________________WD 3________________)    (_________________WD 4_

Query      641 DNLIVGSKEGKMCWFDMDLSSKPYKTLKNHPKDITNVAVHRSYPLFASCSEDSTAYVFHGMVYNDLNQNPLIVPLEILRG 720 
WD40-rpts      _______________)    (_________________WD 5________________)            (________

Query      721 HSSKGGVLDCKFHPRQPWLFTAGADSIIKLYCH 753 
WD40-rpts      __________WD 6_________________) 

6 WD40-repeats found in QUERY=AT2G40360.1 (Len=753):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   420-451      7.98  444.41  6.4e-05       35.0%     45.38
  WD 2:  Seg 13   532-572      3.25  248.85  0.02724       12.5%     42.52
  WD 3:  Seg 17   576-613      3.12  243.39  0.03219       10.0%     48.00
  WD 4:  Seg 21   618-656      6.85  397.46  0.00027       27.5%     55.03
  WD 5:  Seg 25   661-699      7.23  413.16  0.00017       27.5%     53.14
  WD 6:  Seg 29   712-752      5.23  330.50  0.00219       32.5%     49.67

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  420-451    --------KGHTG--AVTSISTDSSGEWIAS---GSTDGSVRMWE
   WD 2  532-572    LYGGIKI--RHFK--SISSIDWHRKGDYLSTVMASGETRGVVLHQ
   WD 3  576-613    -QKTQRLPFKIRG--LPVCTLFHPSLSYFFV---AT-RKDVRVYN
   WD 4  618-656    -GEATKKLETGLR--EISSMAIHPGGDNLIV---GSKEGKMCWFD
   WD 5  661-699    -SKPYKTLKNHPK--DITNVAVHRSYPLFAS---CSEDSTAYVFH
   WD 6  712-752    -IVPLEILRGHSSKGGVLDCKFHPRQPWLFT---AGADSIIKLYC

   WD40 Template    TGECLRTLSGHTS--GVTSVSFSPDGKRLVS---GSEDGTIKVWD