Input parameters:

  Query = AT2G40810.1 (Len=393)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G40810.1, Len=393):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSTVSNPQGILQPGSFLLPESESMKKEEAELVSVCWNQDSSCFAAGTSHGFRIYNCEPFKETFRRELKDGGFKIVEMLF 80  
WD40-rpts                        (________________WD 1________________)   (____________________

Query       81 RSNILALVGGGPNSQYPSSKVLIWDDHQSRCISEFAFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQIETQANPR 160 
WD40-rpts      WD 2____________________)(________________WD 3________________)   (_____________

Query      161 GLCCLSHHSNTSVLACPGLNRGEIRVEHFGLNMVQIINAHDSSIACMTLTLDGLLLATASTKGTLIRIFNTMDGTRLQEV 240 
WD40-rpts      _____WD 4_________________)   (_________________WD 5_________________)   (______

Query      241 RRGVDRADIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVVGEDSYSTENGALLTQQNYSNSLQGLVSPTIGTNPGSSLSF 320 
WD40-rpts      ____________WD 6_________________)   (_________________WD 7________________)    

Query      321 MRGVLPKYFSSEWSYAQFHVSEVTQFFAAFGSNNTVAIIGMDGSFYRCSFDPVNGGEMGQLEYIHFMKMDNRP 393 
WD40-rpts             (______________WD 8_____________)                                 

8 WD40-repeats found in QUERY=AT2G40810.1 (Len=393):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    19-56       5.31  334.05  0.00196       10.0%     44.30
  WD 2:  Seg  5    60-105      4.09  283.59  0.00935       15.0%     39.29
  WD 3:  Seg  9   106-143      3.21  247.34  0.02853       15.0%     38.14
  WD 4:  Seg 13   147-187      4.42  297.05  0.00617       10.0%     51.23
  WD 5:  Seg 17   191-230      7.68  431.84  9.4e-05       22.5%     56.82
  WD 6:  Seg 21   234-274      7.03  405.22  0.00022       22.5%     55.81
  WD 7:  Seg 25   278-316      3.50  259.44  0.01968        5.0%      4.15
  WD 8:  Seg 26   328-360      2.97  237.53  0.03849        5.0%     39.20

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   19-56     -LPESESMK-KEE--A--ELVSVCWNQDSSCFA-------AGT-SHG-FRIYN
   WD 2   60-105    -FKETFRRE-LKD--G--GFKIVEMLFRSNILALVGGGPNSQYPSSK-VLIWD
   WD 3  106-143    DHQSRCISEFAFR--S--EIRAVKLRRDRIVVV-------L---EHK-IYVYN
   WD 4  147-187    -LRLLHQIE-TQA--NPRGLCCLSHHSNTSVLA-------CPGLNRG-EIRVE
   WD 5  191-230    -LNMVQIIN-AHD--S--SIACMTLTLDGLLLA-------TASTKGTLIRIFN
   WD 6  234-274    -GTRLQEVR-RGVDRA--DIYSIALSPNVQWLA-------VSSDKGT-VHIFS
   WD 7  278-316    -RVVGEDSY-STE--N--GALLTQQNYSNSLQG-------LVSPTIG-TNPGS
   WD 8  328-360    -------YF-SSE--W--SYAQFHVSEVTQFFA-------AFGSNNT-VAIIG

   WD40 Template    TGECLRTLS-GHT--S--GVTSVSFSPDGKRLV-------SGSEDGT-IKVWD