Input parameters:

  Query = AT2G40810.2 (Len=393)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G40810.2, Len=393):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSTVSNPQGILQPGSFLLPESESMKKEEAELVSVCWNQDSSCFAAGTSHGFRIYNCEPFKETFRRELKDGGFKIVEMLF 80  
WD40-rpts                        (________________WD 1________________)   (____________________

Query       81 RSNILALVGGGPNSQYPSSKVLIWDDHQSRCISEFAFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQIETQANPR 160 
WD40-rpts      WD 2____________________)   (_______________WD 3______________)   (_____________

Query      161 GLCCLSHHSNTSVLACPGLNRGEIRVEHFGLNMVQIINAHDSSIACMTLTLDGLLLATASTKGTLIRIFNTMDGTRLQEV 240 
WD40-rpts      _____WD 4_________________)   (_________________WD 5_________________)   (______

Query      241 RRGVDRADIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVVGEDSYSTENGALLTQQNYSNSLQGLVSPTIGTNPGSSLSF 320 
WD40-rpts      ____________WD 6_________________)   (_________________WD 7________________)    

Query      321 MRGVLPKYFSSEWSYAQFHVSEVTQFFAAFGSNNTVAIIGMDGSFYRCSFDPVNGGEMGQLEYIHFMKMDNRP 393 
WD40-rpts             (______________WD 8_____________)                                 

8 WD40-repeats found in QUERY=AT2G40810.2 (Len=393):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    19-56       5.45  339.85  0.00164       10.0%     46.93
  WD 2:  Seg  4    60-105      4.68  308.05  0.00439       15.0%     39.19
  WD 3:  Seg  8   109-143      3.35  253.16  0.02387       17.5%     43.17
  WD 4:  Seg 12   147-187      4.53  301.94  0.00530       10.0%     50.60
  WD 5:  Seg 16   191-230      7.91  441.46  7.0e-05       22.5%     58.00
  WD 6:  Seg 20   234-274      7.30  416.30  0.00015       22.5%     56.96
  WD 7:  Seg 24   278-316      3.49  259.00  0.01995        5.0%     10.53
  WD 8:  Seg 25   328-360      3.36  253.45  0.02366        5.0%     40.01

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   19-56     LPESESMKKEE--A--ELVSVCWNQDSSCFA-------AGT-SHG-FRIYN
   WD 2   60-105    FKETFRRELKD--G--GFKIVEMLFRSNILALVGGGPNSQYPSSK-VLIWD
   WD 3  109-143    SRCISEFA-FR--S--EIRAVKLRRDRIVVV-------L---EHK-IYVYN
   WD 4  147-187    LRLLHQIETQA--NPRGLCCLSHHSNTSVLA-------CPGLNRG-EIRVE
   WD 5  191-230    LNMVQIINAHD--S--SIACMTLTLDGLLLA-------TASTKGTLIRIFN
   WD 6  234-274    GTRLQEVRRGVDRA--DIYSIALSPNVQWLA-------VSSDKGT-VHIFS
   WD 7  278-316    RVVGEDSYSTE--N--GALLTQQNYSNSLQG-------LVSPTIG-TNPGS
   WD 8  328-360    ------YFSSE--W--SYAQFHVSEVTQFFA-------AFGSNNT-VAIIG

   WD40 Template    GECLRTLSGHT--S--GVTSVSFSPDGKRLV-------SGSEDGT-IKVWD