Input parameters:

  Query = AT2G41500.1 (Len=554)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G41500.1, Len=554):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEPNKDDNVSLAATAQISAPPVLQDASSLPGFSAIPPVVPPSFPPPMAPIPMMPHPPVARPPTFRPPVSQNGGVKTSDSD 80  
WD40-rpts                                                                                      

Query       81 SESDDEHIEISEESKQVRERQEKALQDLLVKRRAAAMAVPTNDKAVRDRLRRLGEPITLFGEQEMERRARLTQLLTRYDI 160 
WD40-rpts                                                                                      

Query      161 NGQLDKLVKDHEEDVTPKEEVDDEVLEYPFFTEGPKELREARIEIAKFSVKRAAVRIQRAKRRRDDPDEDMDAETKWALK 240 
WD40-rpts                                                                                      

Query      241 HAKHMALDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWEMPQVTNTIAVLKDHKERATDVVFSPVDDCLATASADR 320 
WD40-rpts          (_________________WD 1________________)    (_________________WD 2___________

Query      321 TAKLWKTDGTLLQTFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCG 400 
WD40-rpts      _____)  (_________________WD 3________________)   (_________________WD 4________

Query      401 LDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYF 480 
WD40-rpts      ________)   (_________________WD 5________________)   (_________________WD 6____

Query      481 LATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSGNDDEDEEKETMDIDL 554 
WD40-rpts      _____________)   (_________________WD 7________________)                  

7 WD40-repeats found in QUERY=AT2G41500.1 (Len=554):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   245-283      8.13  450.32  5.3e-05       32.5%     46.69
  WD 2:  Seg  7   288-326      9.16  492.92  1.4e-05       32.5%     52.62
  WD 3:  Seg 11   329-367      9.96  525.91  5.1e-06       40.0%     55.41
  WD 4:  Seg 15   371-409      9.30  498.73  1.2e-05       32.5%     55.58
  WD 5:  Seg 19   413-451     10.48  547.38  2.6e-06       42.5%     55.34
  WD 6:  Seg 23   455-494      7.90  440.85  7.1e-05       25.0%     55.61
  WD 7:  Seg 27   498-536      9.54  508.72  8.7e-06       32.5%     55.89

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  245-283    MALDCSNFGDDRPLTGCSFSR-DGKILATCSLSGVTKLWE
   WD 2  288-326    TNTIAVLKDHKERATDVVFSP-VDDCLATASADRTAKLWK
   WD 3  329-367    GTLLQTFEGHLDRLARVAFHP-SGKYLGTTSYDKTWRLWD
   WD 4  371-409    GAELLLQEGHSRSVYGIAFQQ-DGALAASCGLDSLARVWD
   WD 5  413-451    GRSILVFQGHIKPVFSVNFSP-NGYHLASGGEDNQCRIWD
   WD 6  455-494    RKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWS
   WD 7  498-536    FSLVKSLAGHESKVASLDITA-DSSCIATVSHDRTIKLWT

   WD40 Template    GECLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD