Input parameters:

  Query = AT2G43770.1 (Len=343)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G43770.1, Len=343):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEIMSRENETALSGPRPMEWSTVPHSASQGPGPNGKNRTSSLEAPIMLLSGHPSAVYTMKFNPAGTLIASGSHDREIFLW 80  
WD40-rpts          (_________________WD 1_________________)________________WD 2________________

Query       81 RVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASPDKTVRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDD 160 
WD40-rpts      )    (_________________WD 3________________)   (_________________WD 4___________

Query      161 GTAKLWDMRQRGAIQTFPDKYQITAVSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTN 240 
WD40-rpts      ______)   (________________WD 5________________)   (_________________WD 6_______

Query      241 GMDNKLCVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGTKVTAGSSDRMVHIWDTTSRRTIYKLPGHTGSVNEC 320 
WD40-rpts      _________)       (___________________WD 7__________________)   (________________

Query      321 VFHPTEPIIGSCSSDKNIYLGEI 343 
WD40-rpts      _WD 8________________) 

8 WD40-repeats found in QUERY=AT2G43770.1 (Len=343):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-44       7.26  414.60  0.00016       15.0%     19.02
  WD 2:  Seg  3    43-81       8.40  461.58  3.7e-05       37.5%     50.65
  WD 3:  Seg  7    86-124      9.66  513.60  7.4e-06       30.0%     56.40
  WD 4:  Seg 11   128-167      8.92  482.95  1.9e-05       40.0%     54.17
  WD 5:  Seg 15   171-208      8.19  453.12  4.9e-05       30.0%     55.95
  WD 6:  Seg 19   212-250     10.41  544.47  2.9e-06       42.5%     55.66
  WD 7:  Seg 23   258-300      8.57  468.76  3.0e-05       32.5%     57.16
  WD 8:  Seg 27   304-342      9.10  490.54  1.5e-05       27.5%     54.99

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-44     SRENETALSGPR----PMEWSTVPHSASQGP-GPNGKNRTSSLEA
   WD 2   43-81     -EAPIMLLSGHP----SAVYTMKFNPAGTLI-ASGSHDREIFLWR
   WD 3   86-124    -CKNFMVLKGHK----NAILDLHWTSDGSQI-VSASPDKTVRAWD
   WD 4  128-167    -GKQIKKMAEHS----SFVNSCCPTRRGPPLIISGSDDGTAKLWD
   WD 5  171-208    -RGAIQTFPDKY----Q-ITAVSFSDAADKI-FTGGVDNDVKVWD
   WD 6  212-250    -GEATMTLEGHQ----DTITGMSLSPDGSYL-LTNGMDNKLCVWD
   WD 7  258-300    -NRCVKIFEGHQHNFEKNLLKCSWSPDGTKV-TAGSSDRMVHIWD
   WD 8  304-342    -RRTIYKLPGHT----GSVNECVFHPTEPII-GSCSSDKNIYLGE

   WD40 Template    TGECLRTLSGHT----SGVTSVSFSPDGKRL-VSGSEDGTIKVWD