WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: AT2G45540.1 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT2G45540.1 (Len=2946) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT2G45540.1, Len=2946): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MEDDDERKLPEADIANPLHNRIEAFDTTLQGISSADRAFKDDDFEQVSLGDQEKAANESQGDLQEPGSFSNSDHGRSSFG 80
WD40-rpts
Query 81 GTEVVTYQLSGTQEMYDLMPMDDVQSDRLSSPGPEREAAYSMQQSLSETSLDSVHHPESGYSPVHSPQKPKPKATVPNVS 160
WD40-rpts
Query 161 PELLHLVDSAIMGKPESLDKLKNVVCGIENFGCGEESEATAFLVVDSLIATMGGVESFEEDEDSNPPSVMLNSRAAIVSG 240
WD40-rpts
Query 241 ELIPWLPGLGDNVNFMSPRTRMVRGLLVILRSCTRNRAMCSTAGLLGVLLRSVEAIISKDVDMKWNAAAILLLCIQHLAG 320
WD40-rpts
Query 321 HSLSVDDLHRWLQVIKAAITTAWSSPLMLALEKAMSGKESRGPACTFEFDGESSGLLGPGESRWPFTNGYAFATWIYIES 400
WD40-rpts
Query 401 FADTLNAATAAAAIAAAAAAKSGKTSAMSAAAAASALAGEGTAHMPRLFSFLSADNQGIEAYFHAQFLVVESGSGKGRKS 480
WD40-rpts
Query 481 SLHFTHAFKPQCWYFIGLEHSCKQGLLGKAESELRLYIDGSLYESRPFDFPRISKPLSFCCIGTNPPPTMAGLQRRRRQC 560
WD40-rpts
Query 561 PLFAEMGPVYIFKEPIGPERMARLASRGGDVLPCFGNGAGLPWLATNDYVRNKAEESSILDADIGGYTHLLYHPCLLSGR 640
WD40-rpts
Query 641 FCPDASLSGAAGTLRRPAEVLGQVHVATRMKPVESFWALAYGGPMSLLPLTVSSVHKDSLEPCLGNLPLSLSTVTLAAPV 720
WD40-rpts
Query 721 FRIMSVAIQHPGNNEELCRTQGPEILARILSYLLHSLASLDRKHDGVGEEELVAAIVSLCQSQKINHVLKVQLFRTLLLD 800
WD40-rpts
Query 801 LKIWSLCNYGLQKKLLSSLQDMVFTEATAMRDAEAIQLLLDGCRRCYWMISEKDSETTFPLDGNTRQMGELNALIDELLV 880
WD40-rpts
Query 881 IIELLMGAASPSLAADDLRRLLGFIIDSPQPNQVARVLHLMYRLVVQPNAARAQMFAEVFITSGGIETLLVLLQREAKTG 960
WD40-rpts
Query 961 EDNVLAMGRSGKRSSTDPSEKSPYNESGSVKQLDSNPHDNEIGFDLPGPDGNSVEDDNVGSLNVPESVRQEKEHGSTPVV 1040
WD40-rpts
Query 1041 CDSDSVSISNSINTERLSAEIGGISLSISADSARNNVYNVDNSDAVVVGIIRLIGALISSGHLTFDFDARSDVTSNILGS 1120
WD40-rpts
Query 1121 GLHENGGTMFDDKVALLLFALLKAFQAAPNRLMTDNVYTTLLGASINASSTEDGLNFYDSGHRFEHSQLLLVLLRSLPSA 1200
WD40-rpts
Query 1201 SKALQSRALQDLLFLACSHPENRSSLTTMEEWPEWILEILISNYEKDAGKQSASVGSCEVEDMIHNFLIIMLEHSMRQKD 1280
WD40-rpts
Query 1281 GWKDIEATIHCAEWLSIVGGSSTGEQRIRREESLPIFKRRLFGGLLDFAARELQAQTQVIAAAAAGVAAEGLAPKDAKAG 1360
WD40-rpts
Query 1361 AENAAQLSVFLVENAIVILMLVEDHLRSQSKQTCATNAVASPSPLKKRTSTLTAIGESSEISSSRASLSSDSGKVPLDIL 1440
WD40-rpts
Query 1441 ASMADSSGQISAVAMERLTAASAAEPYESVSCAFVSYGSCAMDLAEGWKYRSRLWYGVGLPSKPSSLGGGGSGSDSWKST 1520
WD40-rpts
Query 1521 LEKDAHGNWIELPLVKKSVSMLQALLLDESGLGGGLGIGGGSGTGMGGMTALYQLLDSDQPFLCMLRMVLLSMREEDYGE 1600
WD40-rpts
Query 1601 DNMLMRNLSSERSSGNSVTLDSGSQMSMRQSRSALLWSVLSPIINMPISDSKRQRVLVTACVLYSEVWHAISRDRRPLRK 1680
WD40-rpts
Query 1681 QYIEAIVPPFIAVLRRWRPLLAGIHELATADGMNPLVVDDRALAADALPVEGALSMVTPEWAAAFASPPAAMSLAMIAAG 1760
WD40-rpts
Query 1761 AAGWEAPPPPTPSHLRRDSSMLERKTAKLQTFSSFQKPLEPPNNNAPPRPRDKAAAKAAALAAARDLERNAKIGSGRGLS 1840
WD40-rpts
Query 1841 AVAMATSAQRRNIGDMERLQRWNTSEAMGVAWMECLQPVDTKSVYGKDFNALSYKFIAVLVASFALARNMQRSEIDRRMQ 1920
WD40-rpts
Query 1921 DDIIAANRLCLGSRAWRKLIRYLAEMRCFFGPFGDGICSPERVFWKLDSMESFSRMRQSIRRNYSGTDHHGAAADYDDQT 2000
WD40-rpts
Query 2001 ETKSDNGSKGSQSNPPVVAAEVILMEIAYEEDEHGEGDQLDVKGNAEEHKRDEGRISGSHEHASRTSAGNSDPRTSNDLE 2080
WD40-rpts
Query 2081 MVRDSSVVAPGFVPSELDERILLELPTSMVRPLRVVKGTFQITTRRINFIVDNRESQNLADHSDESQSGDQEKDRSWPMS 2160
WD40-rpts
Query 2161 SLHQIYSRRYLLRRSALELFMVDRSNFFFDFGNTEGRRNAYRAIVQARPPHLNNIYLATQRPEQLLRRTQLMERWARWEI 2240
WD40-rpts
Query 2241 SNFEYLMQLNTLAGRSYNDITQYPVFPWIISDNSSESLDLSNPSTFRDLSKPIGALNPERLKKFQERYSSFEDPVIPKFH 2320
WD40-rpts
Query 2321 YGSHYSSAGAVLYYLARVEPFTTLSIQLQGGKFDHADRMFSDFPGTWNGVLEDMSDVKELVPELFYLPEVLTNENSIDFG 2400
WD40-rpts
Query 2401 TTQLGEKLDAVKLPPWAKNPVDFVHKQRRALESEHVSAHLHEWIDLIFGYKQRGKEAIMANNVFFYITYEGTVDIDKITD 2480
WD40-rpts
Query 2481 PVQQRATQDQIAYFGQTPSQLLTVPHMKRMPLKDVLHMQTIFRNPKEIKPYTVQTPERCNLPASAIQASSDSVVIVDMNV 2560
WD40-rpts
Query 2561 PAARVAQHKWQPNTPDGQGTPFLFHHGKATTTSTSGSLMRMFKGPASSGTGDWQFPQAQAFASSGIRSSSVIAITSDGEI 2640
WD40-rpts (___________________________WD 1______________
Query 2641 ITGGHADNSIKLVSSDGAKTLETAFGHCAPVTCLALSPDNNFLVTGSRDSTVLLWRIHKAFTSRTSVSEPSTGSGAPSST 2720
WD40-rpts _____________) (_________________WD 2________________)
Query 2721 SNTNLANTLANKGKKCRLEGPIQVLRGHRRELVCCCVSSDQGVVVSSSESSDVLLHSIRKGRLIRRLVGVKADSLCISSD 2800
WD40-rpts (_________________WD 3________________)(_________________WD 4_
Query 2801 GVIMAWSSSEGSISVFTINGVLIAKAKFPLFCSVGCMEISMDGQNALIGMNSCSNSDYSSSNDTSKDSKEIERLDVPSPS 2880
WD40-rpts ________________) (_________________WD 5________________)
Query 2881 ICFLNLYTLQVFHVLKLGQGQDITALALNVDNTNLLVSTEDKQLIIFTDPALSLKVVDQMLKLGWE 2946
WD40-rpts (___________________WD 6__________________)
 6 WD40-repeats found in QUERY=AT2G45540.1 (Len=2946): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 31 2595-2654 3.36 253.54 0.02359 25.0% 48.28 WD 2: Seg 35 2658-2696 8.16 451.91 5.0e-05 40.0% 56.81 WD 3: Seg 43 2739-2777 6.16 369.18 0.00066 25.0% 55.60 WD 4: Seg 47 2778-2817 3.89 275.25 0.01209 20.0% 46.69 WD 5: Seg 51 2821-2859 4.38 295.76 0.00642 12.5% 45.07 WD 6: Seg 55 2886-2928 4.53 301.84 0.00532 15.0% 52.77Multiple sequence alignment of 6 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2595-2654 SGSLM---RMFKGPASSGTGDWQFPQAQAFASSGIRSSSVIAITSDGEIITGGHADNSIKLVS WD 2 2658-2696 -AKTL---ETAFGHCAP--------------------VTCLALSPDNNFLVTGSRDSTVLLWR WD 3 2739-2777 EGP-I---QVLRGHRRE--------------------LVCCCVSSDQGVVVSSSESSDVLLHS WD 4 2778-2817 IRKGR---LIRRLVGVK--------------------ADSLCISSDGVIMAWSSSEGSISVFT WD 5 2821-2859 -VLIA---KAKFPLFCS--------------------VGCMEISMDGQNALIGMNSCSNSDYS WD 6 2886-2928 LYTLQVFHVLKLGQGQD--------------------ITALALNVDNTNLLVSTEDKQLIIFT WD40 Template TGECL---RTLSGHTSG--------------------VTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |