WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: AT2G45540.2 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT2G45540.2 (Len=3001) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT2G45540.2, Len=3001): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MEDDDERKLPEADIANPLHNRIEAFDTTLQGISSADRAFKDDDFEQVSLGDQEKAANESQGDLQEPGSFSNSDHGRSSFG 80
WD40-rpts
Query 81 GTEVVTYQLSGTQEMYDLMPMDDVQSDRLSSPGPEREAAYSMQQSLSETSLDSVHHPESGYSPVHSPQKPKPKATVPNVS 160
WD40-rpts
Query 161 PELLHLVDSAIMGKPESLDKLKNVVCGIENFGCGEESEATAFLVVDSLIATMGGVESFEEDEDSNPPSVMLNSRAAIVSG 240
WD40-rpts
Query 241 ELIPWLPGLGDNVNFMSPRTRMVRGLLVILRSCTRNRAMCSTAGLLGVLLRSVEAIISKDVDMKWNAAAILLLCIQHLAG 320
WD40-rpts
Query 321 HSLSVDDLHRWLQVIKAAITTAWSSPLMLALEKAMSGKESRGPACTFEFDGESSGLLGPGESRWPFTNGYAFATWIYIES 400
WD40-rpts
Query 401 FADTLNAATAAAAIAAAAAAKSGKTSAMSAAAAASALAGEGTAHMPRLFSFLSADNQGIEAYFHAQFLVVESGSGKGRKS 480
WD40-rpts
Query 481 SLHFTHAFKPQCWYFIGLEHSCKQGLLGKAESELRLYIDGSLYESRPFDFPRISKPLSFCCIGTNPPPTMAGLQRRRRQC 560
WD40-rpts
Query 561 PLFAEMGPVYIFKEPIGPERMARLASRGGDVLPCFGNGAGLPWLATNDYVRNKAEESSILDADIGGYTHLLYHPCLLSGR 640
WD40-rpts
Query 641 FCPDASLSGAAGTLRRPAEVLGQVHVATRMKPVESFWALAYGGPMSLLPLTVSSVHKDSLEPCLGNLPLSLSTVTLAAPV 720
WD40-rpts
Query 721 FRIMSVAIQHPGNNEELCRTQGPEILARILSYLLHSLASLDRKHDGVGEEELVAAIVSLCQSQKINHVLKVQLFRTLLLD 800
WD40-rpts
Query 801 LKIWSLCNYGLQKKLLSSLQDMVFTEATAMRDAEAIQLLLDGCRRCYWMISEKDSETTFPLDGNTRQMGELNALIDELLV 880
WD40-rpts
Query 881 IIELLMGAASPSLAADDLRRLLGFIIDSPQPNQVHCKFNANASAVCSLLALLLIKLVPLFRSQIMYMNSRKPSYNGLHGE 960
WD40-rpts
Query 961 MWVISRENGLTDCTRLCWLVVQPNAARAQMFAEVFITSGGIETLLVLLQREAKTGEDNVLAMGRSGKRSSTDPSEKSPYN 1040
WD40-rpts
Query 1041 ESGSVKQLDSNPHDNEIGFDLPGPDGNSVEDDNVGSLNVPESVRQEKEHGSTPVVCDSDSVSISNSINTERLSAEIGGIS 1120
WD40-rpts
Query 1121 LSISADSARNNVYNVDNSDAVVVGIIRLIGALISSGHLTFDFDARSDVTSNILGSGLHENGGTMFDDKVALLLFALLKAF 1200
WD40-rpts
Query 1201 QAAPNRLMTDNVYTTLLGASINASSTEDGLNFYDSGHRFEHSQLLLVLLRSLPSASKALQSRALQDLLFLACSHPENRSS 1280
WD40-rpts
Query 1281 LTTMEEWPEWILEILISNYEKDAGKQSASVGSCEVEDMIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSSTGE 1360
WD40-rpts
Query 1361 QRIRREESLPIFKRRLFGGLLDFAARELQAQTQVIAAAAAGVAAEGLAPKDAKAGAENAAQLSVFLVENAIVILMLVEDH 1440
WD40-rpts
Query 1441 LRSQSKQTCATNAVASPSPLKKRTSTLTAIGESSEISSSRASLSSDSGKVPLDILASMADSSGQISAVAMERLTAASAAE 1520
WD40-rpts
Query 1521 PYESVSCAFVSYGSCAMDLAEGWKYRSRLWYGVGLPSKPSSLGGGGSGSDSWKSTLEKDAHGNWIELPLVKKSVSMLQAL 1600
WD40-rpts
Query 1601 LLDESGLGGGLGIGGGSGTGMGGMTALYQLLDSDQPFLCMLRMVLLSMREEDYGEDNMLMRNLSSERSSGNSVTLDSGSQ 1680
WD40-rpts
Query 1681 MSMRQSRSALLWSVLSPIINMPISDSKRQRVLVTACVLYSEVWHAISRDRRPLRKQYIEAIVPPFIAVLRRWRPLLAGIH 1760
WD40-rpts
Query 1761 ELATADGMNPLVVDDRALAADALPVEGALSMVTPEWAAAFASPPAAMSLAMIAAGAAGWEAPPPPTPSHLRRDSSMLERK 1840
WD40-rpts
Query 1841 TAKLQTFSSFQKPLEPPNNNAPPRPRDKAAAKAAALAAARDLERNAKIGSGRGLSAVAMATSAQRRNIGDMERLQRWNTS 1920
WD40-rpts
Query 1921 EAMGVAWMECLQPVDTKSVYGKDFNALSYKFIAVLVASFALARNMQRSEIDRRMQDDIIAANRLCLGSRAWRKLIRYLAE 2000
WD40-rpts
Query 2001 MRCFFGPFGDGICSPERVFWKLDSMESFSRMRQSIRRNYSGTDHHGAAADYDDQTETKSDNGSKGSQSNPPVVAAEVILM 2080
WD40-rpts
Query 2081 EIAYEEDEHGEGDQLDVKGNAEEHKRDEGRISGSHEHASRTSAGNSDPRTSNDLEMVRDSSVVAPGFVPSELDERILLEL 2160
WD40-rpts
Query 2161 PTSMVRPLRVVKGTFQITTRRINFIVDNRESQNLADHSDESQSGDQEKDRSWPMSSLHQIYSRRYLLRRSALELFMVDRS 2240
WD40-rpts
Query 2241 NFFFDFGNTEGRRNAYRAIVQARPPHLNNIYLATQRPEQLLRRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPV 2320
WD40-rpts
Query 2321 FPWIISDNSSESLDLSNPSTFRDLSKPIGALNPERLKKFQERYSSFEDPVIPKFHYGSHYSSAGAVLYYLARVEPFTTLS 2400
WD40-rpts
Query 2401 IQLQGGKFDHADRMFSDFPGTWNGVLEDMSDVKELVPELFYLPEVLTNENSIDFGTTQLGEKLDAVKLPPWAKNPVDFVH 2480
WD40-rpts
Query 2481 KQRRALESEHVSAHLHEWIDLIFGYKQRGKEAIMANNVFFYITYEGTVDIDKITDPVQQRATQDQIAYFGQTPSQLLTVP 2560
WD40-rpts
Query 2561 HMKRMPLKDVLHMQTIFRNPKEIKPYTVQTPERCNLPASAIQASSDSVVIVDMNVPAARVAQHKWQPNTPDGQGTPFLFH 2640
WD40-rpts
Query 2641 HGKATTTSTSGSLMRMFKGPASSGTGDWQFPQAQAFASSGIRSSSVIAITSDGEIITGGHADNSIKLVSSDGAKTLETAF 2720
WD40-rpts (_________________WD 1_________________) (_______
Query 2721 GHCAPVTCLALSPDNNFLVTGSRDSTVLLWRIHKAFTSRTSVSEPSTGSGAPSSTSNTNLANTLANKGKKCRLEGPIQVL 2800
WD40-rpts __________WD 2________________) (______
Query 2801 RGHRRELVCCCVSSDQGVVVSSSESSDVLLHSIRKGRLIRRLVGVKADSLCISSDGVIMAWSSSEGSISVFTINGVLIAK 2880
WD40-rpts ___________WD 3________________)(_________________WD 4_________________)(_______
Query 2881 AKFPLFCSVGCMEISMDGQNALIGMNSCSNSDYSSSNDTSKDSKEIERLDVPSPSICFLNLYTLQVFHVLKLGQGQDITA 2960
WD40-rpts ___________WD 5__________________) (___________________
Query 2961 LALNVDNTNLLVSTEDKQLIIFTDPALSLKVVDQMLKLGWE 3001
WD40-rpts WD 6__________________)
 6 WD40-repeats found in QUERY=AT2G45540.2 (Len=3001): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 36 2670-2709 4.57 303.62 0.00503 17.5% 45.91 WD 2: Seg 39 2713-2751 8.25 455.62 4.5e-05 40.0% 58.87 WD 3: Seg 47 2794-2832 5.66 348.44 0.00125 25.0% 54.56 WD 4: Seg 51 2833-2872 3.62 264.40 0.01690 20.0% 48.07 WD 5: Seg 55 2873-2914 3.16 245.05 0.03060 15.0% 40.86 WD 6: Seg 59 2941-2983 3.72 268.42 0.01493 15.0% 53.82Multiple sequence alignment of 6 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2670-2709 FPQAQ--AFAS---SGIRSSSVIAITSDGEIITGGHADNSIKLVS WD 2 2713-2751 -AKTL--ETAF---GHCAPVTCLALSPDNNFLVTGSRDSTVLLWR WD 3 2794-2832 EGP-I--QVLR---GHRRELVCCCVSSDQGVVVSSSESSDVLLHS WD 4 2833-2872 IRKGR--LIRR---LVGVKADSLCISSDGVIMAWSSSEGSISVFT WD 5 2873-2914 INGVLIAKAKF---PLFCSVGCMEISMDGQNALIGMNSCSNSDYS WD 6 2941-2983 LYTLQ--VFHVLKLGQGQDITALALNVDNTNLLVSTEDKQLIIFT WD40 Template TGECL--RTLS---GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |