Input parameters:

  Query = AT2G46280.1 (Len=328)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G46280.1, Len=328):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRPILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWD 80  
WD40-rpts      (________________WD 1________________)   (_________________WD 2________________)

Query       81 VKSGKELFTFKFNAPTRSVDFAVGDRLAVITTDHFVDRTAAIHVKRIAEDPEEQDAESVLVLHCPDGKKRINRAVWGPLN 160 
WD40-rpts         (________________WD 3________________)                (_________________WD 4_

Query      161 QTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAV 240 
WD40-rpts      _______________)   (__________________WD 5__________________)   (_______________

Query      241 SLSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 320 
WD40-rpts      __WD 6_________________)               (_________________WD 7________________)  

Query      321 SDYFNIKI 328 
WD40-rpts              

7 WD40-repeats found in QUERY=AT2G46280.1 (Len=328):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.38  460.89  3.8e-05       25.0%     51.04
  WD 2:  Seg  5    42-80      10.42  545.25  2.8e-06       45.0%     54.68
  WD 3:  Seg  9    84-121      6.55  385.09  0.00040       17.5%     54.58
  WD 4:  Seg 13   138-176      7.67  431.40  9.5e-05       22.5%     56.39
  WD 5:  Seg 17   180-221      8.66  472.22  2.7e-05       35.0%     56.95
  WD 6:  Seg 21   225-264      4.80  312.84  0.00378       25.0%     53.60
  WD 7:  Seg 26   280-318      9.87  522.17  5.7e-06       32.5%     55.31

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MRPIL--MK---GHERPLTFLRYNREGDLLFSCA--KDHTPTLWF
   WD 2   42-80     -GERLGTYR---GHNGAVWCCDVSRDSSRLITGS--ADQTAKLWD
   WD 3   84-121    -GKELFTFK---FNAP-TRSVDFAVGDRLAVITT--DHFVDRTAA
   WD 4  138-176    -SVLVLHCP---DGKKRINRAVWGPLNQTIVSGG--EDKVIRIWD
   WD 5  180-221    -GKLLKQSDEEVGHKKDITSLCKAADDSHFLTGS--LDKTAKLWD
   WD 6  225-264    -LTLLKTYT---TVVP-VNAVSLSPLLNHVVLGGGQDASAVTTTD
   WD 7  280-318    -QEEIGGVK---GHFGPINALAFNPDGKSFSSGG--EDGYVRLHH

   WD40 Template    TGECLRTLS---GHTSGVTSVSFSPDGKRLVSGS--EDGTIKVWD