Input parameters:

  Query = AT2G46280.2 (Len=328)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G46280.2, Len=328):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRPILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWD 80  
WD40-rpts      (________________WD 1________________)   (_________________WD 2________________)

Query       81 VKSGKELFTFKFNAPTRSVDFAVGDRLAVITTDHFVDRTAAIHVKRIAEDPEEQDAESVLVLHCPDGKKRINRAVWGPLN 160 
WD40-rpts         (________________WD 3________________)                (_________________WD 4_

Query      161 QTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAV 240 
WD40-rpts      _______________)   (__________________WD 5__________________)   (_______________

Query      241 SLSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD 320 
WD40-rpts      __WD 6_________________)               (_________________WD 7________________)  

Query      321 SDYFNIKI 328 
WD40-rpts              

7 WD40-repeats found in QUERY=AT2G46280.2 (Len=328):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.61  470.17  2.9e-05       22.5%     51.16
  WD 2:  Seg  5    42-80      10.44  545.89  2.7e-06       45.0%     56.96
  WD 3:  Seg  9    84-121      6.76  394.11  0.00030       17.5%     56.70
  WD 4:  Seg 13   138-176      7.99  444.51  6.4e-05       22.5%     56.43
  WD 5:  Seg 17   180-221      8.77  476.96  2.3e-05       35.0%     56.12
  WD 6:  Seg 21   225-264      5.13  326.37  0.00249       25.0%     48.35
  WD 7:  Seg 26   280-318      9.92  524.32  5.3e-06       32.5%     57.08

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     -MRPILMK---GHERPLTFLRYNREGDLLF--SCAKDHTPTLWF
   WD 2   42-80     GERLGTYR---GHNGAVWCCDVSRDSSRLI--TGSADQTAKLWD
   WD 3   84-121    GKELFTFK---FNAP-TRSVDFAVGDRLAV--ITTDHFVDRTAA
   WD 4  138-176    SVLVLHCP---DGKKRINRAVWGPLNQTIV--SGGEDKVIRIWD
   WD 5  180-221    GKLLKQSDEEVGHKKDITSLCKAADDSHFL--TGSLDKTAKLWD
   WD 6  225-264    LTLLKTYT---TVVP-VNAVSLSPLLNHVVLGGGQDASAVTTTD
   WD 7  280-318    QEEIGGVK---GHFGPINALAFNPDGKSFS--SGGEDGYVRLHH

   WD40 Template    GECLRTLS---GHTSGVTSVSFSPDGKRLV--SGSEDGTIKVWD