Input parameters:

  Query = AT2G46280.3 (Len=254)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G46280.3, Len=254):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRPILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWD 80  
WD40-rpts      (________________WD 1________________)   (_________________WD 2________________)

Query       81 VKSGKELFTFKFNAPTRSVDFAVGDRLAVITTDHFVDRTAAIHVKRIAEDPEEQDAESVLVLHCPDGKKRINRAVWGPLN 160 
WD40-rpts         (________________WD 3________________)                (_________________WD 4_

Query      161 QTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAV 240 
WD40-rpts      _______________)   (__________________WD 5__________________)                   

Query      241 SLSPLLNHVCTNAS 254 
WD40-rpts                    

5 WD40-repeats found in QUERY=AT2G46280.3 (Len=254):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.73  475.41  2.4e-05       22.5%     50.61
  WD 2:  Seg  5    42-80      10.50  548.31  2.5e-06       45.0%     55.47
  WD 3:  Seg  9    84-121      6.99  403.59  0.00023       17.5%     55.65
  WD 4:  Seg 13   138-176      7.97  443.97  6.5e-05       22.5%     56.54
  WD 5:  Seg 17   180-221      8.90  482.16  2.0e-05       35.0%     56.82

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     -MRPILMK---GHERPLTFLRYNREGDLLFSCAKDHTPTLWF
   WD 2   42-80     GERLGTYR---GHNGAVWCCDVSRDSSRLITGSADQTAKLWD
   WD 3   84-121    GKELFTFK---FNAP-TRSVDFAVGDRLAVITTDHFVDRTAA
   WD 4  138-176    SVLVLHCP---DGKKRINRAVWGPLNQTIVSGGEDKVIRIWD
   WD 5  180-221    GKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWD

   WD40 Template    GECLRTLS---GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD