Input parameters:

  Query = AT2G46290.1 (Len=355)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G46290.1, Len=355):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTIECVNPEGLRFNQMKSSSHQTLETRMRPILMKGHERPLTFLRYNRNGDLLFSCAKDHTPTVWFADNGERLGTYRGHSG 80  
WD40-rpts                                (_________________WD 1________________)   (___________

Query       81 AVWCCDISRDSSRLITGSADQTAKLWDVKSGKELFTFKFGAPARSVDFSVGDHLAVITTDHFVGTSSAIHVKRIAEDPED 160 
WD40-rpts      ______WD 2________________)   (________________WD 3_______________)       (_____

Query      161 QVGDSVLVLQSPDGKKKINRAVWGPLNQTIVSGGEDAAIRIWDAETGKLLKQSDEEVGHKEAITSLCKAADDSHFLTGSH 240 
WD40-rpts      _________________WD 4_____________________)   (__________________WD 5___________

Query      241 DKTAKLWDMRTLTLIKTYTTVVPVNAVAMSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDTILQEEIGGVKGHFGPI 320 
WD40-rpts      _______)   (________________WD 6________________)                 (_____________

Query      321 NALAFSPDGKSFSSGGEDGYVRLHHFDSNYFNIKI 355 
WD40-rpts      ____WD 7________________)          

7 WD40-repeats found in QUERY=AT2G46290.1 (Len=355):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    27-65       8.74  475.75  2.4e-05       25.0%     49.77
  WD 2:  Seg  8    69-107     10.44  545.93  2.7e-06       45.0%     53.60
  WD 3:  Seg 12   111-147      5.09  325.05  0.00259       22.5%     51.23
  WD 4:  Seg 17   155-203      7.76  435.07  8.5e-05       22.5%     56.80
  WD 5:  Seg 21   207-248      8.68  473.17  2.6e-05       35.0%     56.76
  WD 6:  Seg 25   252-289      4.49  300.18  0.00560       20.0%     51.43
  WD 7:  Seg 30   307-345     10.07  530.71  4.4e-06       35.0%     55.61

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   27-65     -RM---------RPILMK---GHERPLTFLRYNRNGDLLFSCAKDHTPTVWF
   WD 2   69-107    -GE---------RLGTYR---GHSGAVWCCDISRDSSRLITGSADQTAKLWD
   WD 3  111-147    -GK---------ELFTF----KFGAPARSVDFSVGD-HLAVITTDHFVGTSS
   WD 4  155-203    AEDPEDQVGDSVLVLQSP---DGKKKINRAVWGPLNQTIVSGGEDAAIRIWD
   WD 5  207-248    -GK---------LLKQSDEEVGHKEAITSLCKAADDSHFLTGSHDKTAKLWD
   WD 6  252-289    -LT---------LIKTYT---TVVP-VNAVAMSPLLNHVVLGGGQDASAVTT
   WD 7  307-345    -QE---------EIGGVK---GHFGPINALAFSPDGKSFSSGGEDGYVRLHH

   WD40 Template    TGE---------CLRTLS---GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD