Input parameters:

  Query = AT2G46340.1 (Len=1029)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G46340.1, Len=1029):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPVMERVAEETVATNNIQLKARVDDVPCNKLDARHNDMVIQSETANSDCPGSSAHRNVDLTKPPPPEEAAGAKLSVEELT 80  
WD40-rpts                                                                                      

Query       81 LGNYRIVQGSNNTNVDSPRAGKFEHLYRLARGSAFRAGDGDLDSQPRDMDQMLSRIRQQLAGAPSERQNLKPFMSRRSDQ 160 
WD40-rpts                                                                                      

Query      161 NLEAFSERLRAAGENSIMNAPALISEGVQMKTPVSSSNFSQLLLKRAMKGKGVVGKNQETPPEFVSDQDLGSKEKKLDIS 240 
WD40-rpts                                                                                      

Query      241 KSPTPHDVLPLKSSPKGNGMVSHGDGNHSKSSIGISLREFLRSSYAKREKRHGLCLFRQLVELVDSAHSKRLFLLDLRPS 320 
WD40-rpts                                                                                      

Query      321 LFTLVPSKKLRYIGNFGKNDLESDVDEDLNRRRPVVEESSSGGRDSKKRKMDLHLNSPGNQLQATSTGRPFKRKSPVIDL 400 
WD40-rpts                                                                                      

Query      401 NMVDARNPDSCELQQQDYIKNLSVSSVSRKQSMSTWLEEQWYTCPEEINGEDIGEKSNIYALGVLLFELLCHCESGEMHA 480 
WD40-rpts                                                                                      

Query      481 AMMADLRHRILPPTFLSKYPKEAGFCLWLLHPEPSSRPSARDILKSELICEDDSVKSTAAAEEISELLLHFLSSLEVQKK 560 
WD40-rpts                                                                                      

Query      561 KKASKLLQDIQTLEDDIKEAERRYSSNVSLVRSHGAIEKRVQSSPLDEHCTTSSALFVPTANTDRLMSNIRQLEDAYFFM 640 
WD40-rpts                                                                                      

Query      641 RSQINLSSSAATARSDKTLKDRDRCSENQNENQDMSTKGKSSDQLEVFFEGLCKFARYSKFETCGTIRSGDLLNSASVVC 720 
WD40-rpts                           (_________________WD 1________________)(___________________

Query      721 SLSFDPDEEHIAAAGISKKIKIFDFNAFMNESVGVHYPLVEMVNKSKLSCVCWNSYIKNYLASTDYDGVVQIWDAGTGQG 800 
WD40-rpts      WD 2___________________)      (___________________WD 3___________________)   (__

Query      801 FSQYTEHQKRAWSVDFSPSDPTKFVSGSDDCSVKLWSINEKRSLGTIWSPANVCCVQFSSYSNHLLAFGSADYKVYCYDL 880 
WD40-rpts      _______________WD 4_________________)   (_________________WD 5________________) 

Query      881 RYVKTPWCTLAGHEKAVSYVKFMDSETIVSASTDNSLKLWNLNKTNSSGLSPGACSLTYKGHTNQKNFVGLSVLDGYIAC 960 
WD40-rpts         (________________WD 6________________)           (_________________WD 7______

Query      961 GSETNEVYSYYKSLPMPMTSYKFGSVDPISGNEYFDDNGQFVSSVCWRKKSNMLVAANSTGNMKLLKLV 1029
WD40-rpts      __________)                 (_________________WD 8________________)  

8 WD40-repeats found in QUERY=AT2G46340.1 (Len=1029):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   662-700      4.09  283.58  0.00935        7.5%     36.96
  WD 2:  Seg 14   701-744      7.28  415.57  0.00016       30.0%     48.67
  WD 3:  Seg 18   751-794      4.96  319.39  0.00309       25.0%     41.74
  WD 4:  Seg 22   798-837      8.39  461.37  3.8e-05       37.5%     54.17
  WD 5:  Seg 26   841-879      5.55  343.98  0.00144       27.5%     56.27
  WD 6:  Seg 30   884-921      7.55  426.42  0.00011       35.0%     41.01
  WD 7:  Seg 33   933-971      7.14  409.72  0.00019       27.5%     53.59
  WD 8:  Seg 37   989-1027     5.19  329.11  0.00228       17.5%     46.72

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  662-700    RDRC----SEN-QNENQDMSTKGKS---------S-DQLEVFFEGLCKFARYSK
   WD 2  701-744    FETCGTIRSGDLLNSASVVCSLSFD---------P-DEEHIAAAGISKKIKIFD
   WD 3  751-794    ---------ESVGVHYPLVEMVNKSKLSCVCWNSY-IKNYLASTDYDGVVQIWD
   WD 4  798-837    -GQG----FSQYTEHQKRAWSVDFS---------PSDPTKFVSGSDDCSVKLWS
   WD 5  841-879    -KRS----LGTIWSPAN-VCCVQFS---------SYSNHLLAFGSADYKVYCYD
   WD 6  884-921    -KTP----WCTLAGHEKAVSYVKFM-----------DSETIVSASTDNSLKLWN
   WD 7  933-971    -GAC----SLTYKGHTNQKNFVGLS---------V-LDGYIACGSETNEVYSYY
   WD 8  989-1027   -ISG----NEYFDDNGQFVSSVCWR---------K-KSNMLVAANSTGNMKLLK

   WD40 Template    TGEC----LRTLSGHTSGVTSVSFS---------P-DGKRLVSGSEDGTIKVWD