Input parameters:

  Query = AT2G47410.2 (Len=1519)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G47410.2, Len=1519):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDWIHKSTPFMEPSNLAKLVQGNVPLQPHDSHSSLTDLDMDLREVYFLILHFLSIGPCERTFGHLRDEILEKGLLPRRYH 80  
WD40-rpts                                                                                      

Query       81 SWWSRSGIYSGRADDDGISLPLSYDNLIERYPHIEKDHLVKLLKQLILNPSFPSHMRVEGNAPNAADVPTLLGSGTFSLV 160 
WD40-rpts                                                     (________________WD 1____________

Query      161 DRNNIESQKARHVASYLRWPHMHADQVRGLSLREIGGGFRKHHRAPSILSACHAIAKPSTMVQKMQNIKKLRGHRNAVYC 240 
WD40-rpts      ___)         (_____________________WD 2_____________________)   (_______________

Query      241 AIFDRSGRYVITGSDDRLVKIWSMETALCLASCRGHEGDITDLAVSSNNALVASASNDFVIRVWRLPDGMPISVLRGHTG 320 
WD40-rpts      __WD 3________________)   (_________________WD 4________________)   (___________

Query      321 AVTAIAFSPRQASVYQLLSSSDDGTCRIWDARYSQWLPRIYVPSPSDANTGSTSNASQSHQILCCAYNANGTIFVTGSSD 400 
WD40-rpts      _______WD 5__________________)                  (_________________WD 6__________

Query      401 SNARVWSASKPNLDDAEQPTHELDVLRGHENDVNYVQFSGCAVAPKSSTADALKEDSYPKFKNSWFCHDNIVTCSRDGSA 480 
WD40-rpts      ______)            (_________________WD 7________________)                      

Query      481 IIWTPRSRKFHGKSGRWMKGYHLKVPPPPLPPQPPRGGPRQRFLPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNAADGS 560 
WD40-rpts                                          (_________________WD 8________________)   (_

Query      561 LVHCLTGHSESSYVLDVHPFNPRIAMSAGYDGKTIIWDIWEGIPIKVYEIGRFKLVDGKFSQDGTSIVLSDDVGQIYFLN 640 
WD40-rpts      ________________WD 9_________________)   (_________________WD10________________)

Query      641 TGQGESQKNAKYDQFFLGDYRPLIRDTNGHVLDQETQLLPHRRNLQDLLCDSSMIPYPEPDQTMFQQRRLGALGVEWRPS 720 
WD40-rpts      (_________________WD11_________________)                  (_________________WD12

Query      721 SIKFSVGPDFSLGQDYIMPPLADLDRLIEPLPEFIDAMYWEPEHEVLSDDNDSEYNAEVSSDGARASPCSNSSNELECSS 800 
WD40-rpts      ________________)                                                               

Query      801 EDSDVENIHESSYHWKRRRKHPKVNVSTSSGRRDKRILDENDSSNSGIKRTKNRRIVVKASKRKHSDVKASRPQRAAAQN 880 
WD40-rpts                                                                                      

Query      881 ARSLLSKISGSSSDEVDDDNDSSNSESDRSIPTLRQLDKPSQMLESLSNDKQKKRLIVKISVKKPAESMGSKGDVINQAD 960 
WD40-rpts                                                                                      

Query      961 LEQLSSKPLEENHRVIGIYSREPGSSSVDAKGDSGCQSIPYSMNTPQREKADNQLIRSSDQDQNMCKWREEIPVCEPTEL 1040
WD40-rpts                                                                                      

Query     1041 TAPENIEEAQPFYGDEADEILPKKVRRLRLKLRHPNSPRKLEPDEVADDLADGGDGFASIAPSFMNPIMDSEPVIDSVRD 1120
WD40-rpts                                                                                      

Query     1121 SSAHNFEFGEATADVIRRKRSIRSESSTRNSALRIRLGSGSVDKIKKQGIPSTSVYDDASLEEWPSTSKAGSRSRSASVS 1200
WD40-rpts                                                                                      

Query     1201 KPSLHTGIRLNSVSGKISWLLLSEHEEGCRYIPQLGDEVIYFKQGHQEFLKTKELNDRDRSRYLPRNLGAVEICKVEKLN 1280
WD40-rpts                                                                                      

Query     1281 YDTYPGSGDSCCKMTLRVLDSSSSHASRKEFQLTLPELINFPDFIVEKTRYDAAIQTNWKIGNECRVWWRDATGEGGAWW 1360
WD40-rpts                                                                                      

Query     1361 EGRIESSQVKSTDFPESPWERYRVVYETGETSLHSPWEFDNPEFPWEKSTIEDERREKLLSLFAGLVKSISKHQDSYGIQ 1440
WD40-rpts                                                                                      

Query     1441 KLNEAAQKMDFCNRFPVPLYPELIHERLENQYYRSIESFKHDVDAMLSNAELYFVRSAHMLSKIKRLRDKLTKTLRKLI 1519
WD40-rpts                                                                                     

12 WD40-repeats found in QUERY=AT2G47410.2 (Len=1519):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   128-164      5.24  330.93  0.00216        7.5%     37.67
  WD 2:  Seg  4   174-221      4.11  284.46  0.00910       17.5%     34.44
  WD 3:  Seg  6   225-263      8.87  480.86  2.1e-05       27.5%     56.92
  WD 4:  Seg 10   267-305      9.08  489.58  1.6e-05       30.0%     56.58
  WD 5:  Seg 14   309-350      8.88  481.38  2.0e-05       45.0%     55.45
  WD 6:  Seg 19   369-407      7.30  416.06  0.00015       17.5%     42.49
  WD 7:  Seg 22   420-458      5.43  339.04  0.00168       25.0%     14.42
  WD 8:  Seg 26   517-555      6.61  387.69  0.00037       22.5%     53.50
  WD 9:  Seg 30   559-598      7.64  430.05  1.0e-04       27.5%     56.67
  WD10:  Seg 34   602-640      7.11  408.20  0.00020       20.0%     54.89
  WD11:  Seg 38   641-680      6.18  369.77  0.00065       10.0%     26.68
  WD12:  Seg 41   699-737      3.87  274.56  0.01236       10.0%     30.15

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  128-164    ---LNPSFPSHMRVEGNAPNAADVP---------TL-LGSGTFSLVDRNN
   WD 2  174-221    -ASYLRWPHMHADQVRGLSLREIGGGFRKHHRAPSI-LSACHAIAKPSTM
   WD 3  225-263    -MQNIKKLRGHRNAVYCAIFDRSGR---------YV-ITGSDDRLVKIWS
   WD 4  267-305    -ALCLASCRGHEGDITDLAVSSNNA---------LV-ASASNDFVIRVWR
   WD 5  309-350    -GMPISVLRGHTGAVTAIAFSPRQA------SVYQL-LSSSDDGTCRIWD
   WD 6  369-407    -NTGSTSNASQSHQILCCAYNANGT---------IF-VTGSSDSNARVWS
   WD 7  420-458    -THELDVLRGHENDVNYVQFSGCAV---------AP-KSSTADALKEDSY
   WD 8  517-555    -GGPRQRFLPTPRGVNMIIWSLDNR---------FV-LAAIMDCRICVWN
   WD 9  559-598    -GSLVHCLTGHSESSYVLDVHPFNP---------RIAMSAGYDGKTIIWD
   WD10  602-640    -GIPIKVYEIGRFKLVDGKFSQDGT---------SI-VLSDDVGQIYFLN
   WD11  641-680    TGQGESQKNAKYDQFFLGDYRPLIR---------DT-NGHVLDQETQLLP
   WD12  699-737    -EPDQTMFQQRRLGALGVEWRPSSI---------KF-SVGPDFSLGQDYI

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGK---------RL-VSGSEDGTIKVWD