Input parameters:

  Query = AT3G01340.1 (Len=302)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G01340.1, Len=302):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPPQKIETGHSDTIHDVVMDYYGKRVATASSDCTIKITGVSNSGGSQHLATLTGHRGPVWQVAWAHPKFGSLLASCSYDG 80  
WD40-rpts      (_________________WD 1________________)      (__________________WD 2____________

Query       81 QIILWKEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSLACGASDGNISVFSARADGGWDTTKIDQAHPVGVTSVSWAP 160 
WD40-rpts      _____)(_____________________WD 3____________________) (_________________________

Query      161 ATEPGALVSSGMIDPVYKLASGGCDSTVKVWKFSNGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVII 240 
WD40-rpts      _WD 4__________________________)       (___________________WD 5_________________

Query      241 WTIGKEGEQWEGTVLKDFKTPVWRVSWSLTGNLLAVSDGNNNVTVWKESVDGEWEQVTVVEP 302 
WD40-rpts      _)(____________________WD 6___________________)               

6 WD40-repeats found in QUERY=AT3G01340.1 (Len=302):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       9.02  487.06  1.7e-05       27.5%     47.47
  WD 2:  Seg  4    46-86       7.97  443.91  6.5e-05       37.5%     54.50
  WD 3:  Seg  8    87-133      7.74  434.22  8.7e-05       30.0%     57.20
  WD 4:  Seg 12   135-192      7.43  421.45  0.00013       40.0%     51.51
  WD 5:  Seg 16   200-242      8.06  447.43  5.8e-05       35.0%     46.36
  WD 6:  Seg 19   243-287      8.09  448.78  5.6e-05       25.0%     52.42

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     -M-----P-----PQKIETGHSDTIHDVVMDYY----GK--------------RVATASSDCTIKITG
   WD 2   46-86     -S-----Q-----HLATLTGHRGPVWQVAWAHP--KFGS--------------LLASCSYDGQIILWK
   WD 3   87-133    EGNQNQWT-----QAHVFTDHKVSVNSIAWAPH--ELGL--------------SLACGASDGNISVFS
   WD 4  135-192    RA-DGGWD-----TTKIDQAHPVGVTSVSWAPA----TEPGALVSSGMIDPVYKLASGGCDSTVKVWK
   WD 5  200-242    -M-----D-----CFPALNKHTDWVRDVAWAPNLGLPKS--------------TIASGSEDGKVIIWT
   WD 6  243-287    IG-----KEGEQWEGTVLKDFKTPVWRVSWSLT----GN--------------LLAVSDGNNNVTVWK

   WD40 Template    TG-----E-----CLRTLSGHTSGVTSVSFSPD----GK--------------RLVSGSEDGTIKVWD