WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: AT3G05090.1 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT3G05090.1 (Len=753) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT3G05090.1, Len=753): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MHRVGSAGSNGGSVRTRKEKKLTYVLNDANDTKHCAGINCLDVLKSSVSNDQSYLFTGSRDGTLKRWAFDEDATFCSATF 80
WD40-rpts (__________________WD 1__________________) (______
Query 81 ESHVDWVNDAALAGESTLVSCSSDTTVKTWDGLSDGVCTRTLRQHSDYVTCLAVAAKNNNVVASGGLGGEVFIWDIEAAL 160
WD40-rpts __________WD 2________________) (_________________WD 3_________________)(____
Query 161 SPVTKPNDANEDSSSNGANGPVTSLRTVGSSNNISVQSSPSHGYTPTIAKGHKESVYALAMNDTGTMLVSGGTEKVLRVW 240
WD40-rpts _______________WD 4___________________) (_________________WD 5________________
Query 241 DPRTGSKSMKLRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALACNPSFSHVYSGGRDQC 320
WD40-rpts ) (_________________WD 6________________)(__________________WD 7______________
Query 321 LYLTDLATRESVLLCTKEHPIQQLALQDNSIWVATTDSSVERWPAEVQSPKTVFQRGGSFLAGNLSFNRARVSLEGLNPA 400
WD40-rpts ____)(_________________WD 8________________)
Query 401 PAYKEPSITVPGTHPIVQHEILNNKRQILTKDAAGSVKLWDITRGVVVEDYGKISFEEKKEELFEMVSIPSWFTVDTRLG 480
WD40-rpts (_________________WD 9________________)(_______________WD10______________)
Query 481 CLSVHLETPQCFSAEMYSADLKVSGRPEDDKINLARETLKGLLGHWLAKKKHKPKPQVLASGDTLSVKDTKKNLSASKTE 560
WD40-rpts (__________________WD11_________________)
Query 561 ESSAASDPVYPPFEFSSVSPPSIITEGSQGGPWRKKITEFTGTEDEKDFPLWCLDAVLNNRLPPRENTKLSFFLHPCEGS 640
WD40-rpts (_________________WD12________________)
Query 641 SVQVVTLGKLSAPRILRVHKVTNYVVEKMVLDNPLDSLAIDAASVSGGQPQPLFSGNGLLQSGLKPWQKLRPSIEILCNS 720
WD40-rpts
Query 721 QVLSPDMSLATVRAYVWKKPEDLILNYRVAIAR 753
WD40-rpts
 12 WD40-repeats found in QUERY=AT3G05090.1 (Len=753): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 27-68 7.05 406.06 0.00021 30.0% 36.13 WD 2: Seg 7 74-111 7.35 418.28 0.00014 32.5% 48.70 WD 3: Seg 11 116-155 7.78 436.17 8.2e-05 32.5% 51.36 WD 4: Seg 15 156-199 6.14 368.26 0.00068 10.0% 41.69 WD 5: Seg 19 203-241 8.95 484.28 1.8e-05 30.0% 50.32 WD 6: Seg 23 245-283 9.43 504.38 9.9e-06 35.0% 56.89 WD 7: Seg 27 284-325 8.58 469.22 2.9e-05 30.0% 56.70 WD 8: Seg 31 326-364 4.54 302.19 0.00526 7.5% 52.66 WD 9: Seg 37 403-441 5.06 323.85 0.00269 12.5% 47.03 WD10: Seg 41 442-476 3.40 255.12 0.02248 12.5% 28.20 WD11: Seg 48 512-552 4.66 307.25 0.00450 17.5% 26.59 WD12: Seg 51 561-599 3.03 239.71 0.03602 10.0% 8.79Multiple sequence alignment of 12 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 27-68 NDANDTK----HCAGINCLDVLKSSVSN-DQSYLFTGSRDGTLKRWA WD 2 74-111 -T--FCS----ATFESHVDWVNDAALAG-EST-LVSCSSDTTVKTWD WD 3 116-155 -G--VCT----RTLRQHSDYVTCLAVAAKNNNVVASGGLGGEVFIWD WD 4 156-199 IE--AALSPVTKPNDANEDSSSNGANGP-VTSLRTVGSSNNISVQSS WD 5 203-241 -G--YTP----TIAKGHKESVYALAMND-TGTMLVSGGTEKVLRVWD WD 6 245-283 -G--SKS----MKLRGHTDNVRVLLLDS-TGRFCLSGSSDSMIRLWD WD 7 284-325 LGQQRCL----HTYAVHTDSVWALACNP-SFSHVYSGGRDQCLYLTD WD 8 326-364 LA-TRES----VLLCTKEHPIQQLALQD-NS--IWVATTDSSVERWP WD 9 403-441 -Y--KEP----SITVPGTHPIVQHEILN-NKRQILTKDAAGSVKLWD WD10 442-476 -----------ITRGVVVEDYGKISFEE-KKEELFEMVSIPSWFTVD WD11 512-552 -I--NLARETLKGLLGH--WLAKKKHKP-KPQVLASGDTLSVKDTKK WD12 561-599 -E--SSA----ASDPVYPPFEFSSVSPP-SIITEGSQGGPWRKKITE WD40 Template TG--ECL----RTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD |
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