Accession: AT3G06880.1 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = AT3G06880.1 (Len=1261)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G06880.1, Len=1261):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAYLSSSQSTFISCSENSSLDSILVSINVYILGVISDPEAWISLKQKCITLLSIEEDNTLFEFSSEHSALSNLYWGIDSI 80  
WD40-rpts                                                                                      

Query       81 EASIHPECSEEKTSRLRNSERMLQMPALLDEQGTTTSGVPNTVLISFSYFYLSIVSYLQGDSLQSTLHFLQSVLVSPEIV 160 
WD40-rpts                                                                                      

Query      161 RTDIAPELCESIFFTPGVYKSDEEIREIARKYKYRATYYQVMSYGETHQPPRECIETPVRRQKEYGQEIFAANAHSVAEK 240 
WD40-rpts                                                                                      

Query      241 LELSETCEKLLQYQNLHSVDLQEEELNDIFNKIKASRKIEKSENNFEGSQCLDCNLQEDYNAEPGKSTRVRCLNEFLNES 320 
WD40-rpts                                                                                      

Query      321 QPDTREDIGTDTLANIFCVSQQQAHKEANKAYNEDTLANRSSSFIGNFNRSIFEIQAQQSKTTWNTHLEDASSLRQLDLE 400 
WD40-rpts                                                                                      

Query      401 EISVFGQKGSISFEGMRRNLQTKKRGNGLETLSRRAPTMDLWMNLQSLIKEVLGNADEKYVSEVTMIYQMLNRKEGFKYS 480 
WD40-rpts                                                                                      

Query      481 MLKDVILDQLFTAISSSEEKTVIKASMTALTKIISVNRTALEEVKRKGLNLSHLANALKQNVQEAAILIYLIKPSPTEIK 560 
WD40-rpts                                                                                      

Query      561 SLELLPALVDVVASTSSSSSCYTFIPSPSYLTPPAASLMIIEVLITAFDHATNTMHLAAISSPSVLCGLLDVAKSGNSGE 640 
WD40-rpts                                                                                      

Query      641 FISLTSILVKCMQFDGLHRKYIYQHTRVAPFAHLLQSKDQEEICIALQFLHEVLKIPRSSAIKILQQIKKEGSFDIKVTL 720 
WD40-rpts                                                                                      

Query      721 LHCIKHLQGDHKLFAADILLQLNALDSPPENKKYRNEATRALLDAVTYSEGSNMQLLSTFILANIGGTYSWTGEPYTAAW 800 
WD40-rpts                                                                                      

Query      801 LMKRGGLTSMSHMNMIRNINWSDECLQDTGIDGWCCKIARRIIDTGKATFCGLQEGLKSKNKSVSKACLIAIAWLSIEIS 880 
WD40-rpts                                                                                      

Query      881 KGPNSLKYSACEVLLDEVAQFLHPGLELEERLLACICIYNFSSGKGIHKLVNFSEGVRESLRRLSHVTWMADELHKATYY 960 
WD40-rpts                                                                                      

Query      961 LFSKSDQRISCVHTQTVEMHQSGSGAVTALIYHKGLLFSGFSDGSIRVWNVNKKIATLLWDIKEHKSTVTCFSLSETGEC 1040
WD40-rpts                   (________________WD 1_______________)     (_________________WD 2___

Query     1041 VLSGSADKTIRVWQIVKGKLECAEVIKTKDSIRKLEAFGNMIFVITKGHKMKLLDSSRISQSIFKGKGVKSMVSAQGKIY 1120
WD40-rpts      _____________)(__________________WD 3_________________)(________________WD 4____

Query     1121 IGCIDTSIQELIVANKREKEIKAPTRSWRLQNKPINSVVVYKDMLYSSSTYVEMSNIKDLRRNYEPQMSITAEKGSNIVA 1200
WD40-rpts      ___________)             (_______________WD 5_______________)   (_______________

Query     1201 MGVVEDFIYLNRSSSANTLQIWLRRTQQKVGRLSAGSKITSLLTANDIVFCGTEAGLMDPF 1261
WD40-rpts      __WD 6________________)

6 WD40-repeats found in QUERY=AT3G06880.1 (Len=1261):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   974-1010     5.70  349.93  0.00120       35.0%     45.33
  WD 2:  Seg 15  1016-1054     9.36  501.25  1.1e-05       40.0%     51.09
  WD 3:  Seg 19  1055-1095     3.56  261.67  0.01838       10.0%     39.16
  WD 4:  Seg 23  1096-1132     3.56  261.64  0.01840       15.0%     44.32
  WD 5:  Seg 27  1146-1181     4.13  285.32  0.00886       17.5%     46.53
  WD 6:  Seg 30  1185-1223     6.67  390.22  0.00034       15.0%     55.26

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  974-1010   T----QTVEMHQSGSGAVTALIYHKGLLFSGFSDG-SIRVWN
   WD 2 1016-1054   -ATLLWDIKEHKSTVTCF-SLSETGECVLSGSADK-TIRVWQ
   WD 3 1055-1095   IVKGKLECAEVIKTKDSIRKLEAFGNMIFVITKGH-KMKLLD
   WD 4 1096-1132   SSRISQSIFKG-KGVKSM-VSAQG--KIYIGCIDT-SIQELI
   WD 5 1146-1181   -----RSWRLQNKPINSV-VVYKDMLYSSSTYVEMSNIKDLR
   WD 6 1185-1223   -EPQMSITAEKGSNIVAM-GVVEDFIYLNRSSSAN-TLQIWL

   WD40 Template    TGECLRTLSGHTSGVTSV-SFSPDGKRLVSGSEDG-TIKVWD