Input parameters:

  Query = AT3G08850.1 (Len=1344)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G08850.1, Len=1344):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALGDLMVSRFSQSSVSLVSNHRYDEDCVSSHDDGDSRRKDSEAKSSSSYGNGTTEGAATATSMAYLPQTIVLCELRHDA 80  
WD40-rpts                                                                                      

Query       81 SEASAPLGTSEIVLVPKWRLKERMKTGCVALVLCLNITVDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYE 160 
WD40-rpts                                                                                      

Query      161 RWQPRARYKVQLDPTVDEVRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELDSWLKTPSI 240 
WD40-rpts                                                                                      

Query      241 YVFDCSAARMILNAFAELHDWGSSGSSGSSRDCILLAACDVHETLPQSVEFPADVFTSCLTTPIKMALKWFCRRSLLKEI 320 
WD40-rpts                                                                                      

Query      321 IDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNVLPHELFQRLFRQDLLVASLFRNFLLAERIMRSANCNPISHPM 400 
WD40-rpts                                                                                      

Query      401 LPPTHQHHMWDAWDMAAEICLSQLPQLVLDPSTEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFR 480 
WD40-rpts                                                                                      

Query      481 ALVLLGRFLDMGSWAVDLALSVGIFPYVLKLLQTTTNELRQILVFIWTKILALDKSCQIDLVKDGGHTYFIRFLDSSGAF 560 
WD40-rpts                                                                                      

Query      561 PEQRAMAAFVLAVIVDGHRRGQEACLEANLIGVCLGHLEASRPSDPQPEPLFLQWLCLCLGKLWEDFMEAQIMGREANAF 640 
WD40-rpts                                                                                      

Query      641 EKLAPLLSEPQPEVRAAAVFALGTLLDIGFDSNKSVVEDEFDDDEKIRAEDAIIKSLLDVVSDGSPLVRAEVAVALARFA 720 
WD40-rpts                                                                                      

Query      721 FGHKQHLKLAAASYWKPQSSSLLTSLPSIAKFHDPGSATIVSLHMSPLTRASTDSQPVARESRISSSPLGSSGLMQGSPL 800 
WD40-rpts                                                                                      

Query      801 SDDSSLHSDSGMMHDSVSNGAVHQPRLLDNAVYSQCVRAMFALAKDPSPRIASLGRRVLSIIGIEQVVAKPSKPTGRPGE 880 
WD40-rpts                                                          (_________________WD 1______

Query      881 AATTSHTPLAGLARSSSWFDMHAGNLPLSFRTPPVSPPRTNYLSGLRRVCSLEFRPHLLGSPDSGLADPLLGASGSERSL 960 
WD40-rpts      ___________)                                                                    

Query      961 LPLSTIYGWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIAKCQHSSISKLNNNPIANWDTRFETGTKTALLHPFSP 1040
WD40-rpts                                                            (__________________WD 2___

Query     1041 IVVAADENERIRVWNYEEATLLNGFDNHDFPDKGISKLCLINELDDSLLLVASCDGSVRIWKNYATKGKQKLVTGFSSIQ 1120
WD40-rpts      ______________)   (___________________WD 3___________________)           (______

Query     1121 GHKPGARDLNAVVDWQQQSGYLYASGETSTVTLWDLEKEQLVRSVPSESECGVTALSASQVHGGQLAAGFADGSLRLYDV 1200
WD40-rpts      ____________WD 4__________________)   (__________________WD 5_________________)(

Query     1201 RSPEPLVCATRPHQKVERVVGLSFQPGLDPAKVVSASQAGDIQFLDLRTTRDTYLTIDAHRGSLTALAVHRHAPIIASGS 1280
WD40-rpts      _____________________WD 6____________________)    (_________________WD 7________

Query     1281 AKQLIKVFSLQGEQLGIIRYYPSFMAQKIGSVSCLTFHPYQVLLAAGAADSFVSIYTHDNSQAR 1344
WD40-rpts      ________)  (____________________WD 8____________________)       

8 WD40-repeats found in QUERY=AT3G08850.1 (Len=1344):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   853-892      3.71  267.83  0.01521       10.0%     -5.84
  WD 2:  Seg 13  1015-1055     6.26  373.09  0.00058       17.5%     54.99
  WD 3:  Seg 17  1059-1102     5.45  339.60  0.00165       22.5%     48.10
  WD 4:  Seg 22  1114-1155     5.51  342.21  0.00152       27.5%     39.07
  WD 5:  Seg 25  1159-1199     5.33  334.78  0.00191       30.0%     56.48
  WD 6:  Seg 29  1200-1246     5.76  352.55  0.00110       30.0%     45.28
  WD 7:  Seg 33  1251-1289     6.55  385.24  0.00040       22.5%     55.39
  WD 8:  Seg 37  1292-1337     5.63  347.35  0.00130       25.0%     55.84

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  853-892    SLG-----RRVLS-IIGIE-------QVVA----KP-----SKP--TGRPGEAATTSHTPLAGL
   WD 2 1015-1055   NNN-----PIANWDTRFET-------GTKT----AL-----LHP--FSPIVVAADENERIRVWN
   WD 3 1059-1102   -AT-----LLNGF-DNHDF-------PDKG----ISKLCLINEL--DDSLLLVASCDGSVRIWK
   WD 4 1114-1155   TG-------FSSI-QGHKP-------GARDLNAVVD-----WQQ--QSGYLYASGETSTVTLWD
   WD 5 1159-1199   -EQ-----LVRSV-PSESE------CGVTA----LS-----ASQ-VHGGQLAAGFADGSLRLYD
   WD 6 1200-1246   VRSPEPLVCATRP-HQKVE-------RVVG----LS-----FQPGLDPAKVVSASQAGDIQFLD
   WD 7 1251-1289   -RD-----TYLTI-DAHRG-------SLTA----LA-----VHR--HAPIIASGSAKQLIKVFS
   WD 8 1292-1337   -GE-----QLGII-RYYPSFMAQKIGSVSC----LT-----FHP--YQVLLAAGAADSFVSIYT

   WD40 Template    TGE-----CLRTL-SGHTS-------GVTS----VS-----FSP--DGKRLVSGSEDGTIKVWD