Input parameters:

  Query = AT3G09080.1 (Len=1026)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G09080.1, Len=1026):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLSQKLKKPSSSTKLILQEIIGLTTKNANGLASVTCSSKCVYLAGCVVVVYDVDSCTQSHLVVSHRMPKPLSCVAISQN 80  
WD40-rpts                              (____________WD 1___________)   (__________________WD 2_

Query       81 GRFVAAGERTRSSKVGSLAFHGNQTDDGFQKGNSFVSVISANRVNSSGSDEQIDEVISIYALTEAGPQTSVIFHVSLGNI 160 
WD40-rpts      ________________)  (__________________WD 3__________________)                   

Query      161 QIQSFPSRAYFSSNKSFFEWLAMKCQVQKCFALSASSRLIACACSKGMVQLFTPETLDYAGTIQFSDAKSSNTENLSQSP 240 
WD40-rpts                    (_________________WD 4________________)      (__________________WD

Query      241 EPKNIESSPGIFPDAVACQFSTTDKLVVIYGNRSLYVWDVDDVNKPTRCSMMISHSAGIWDIKNLSCGNMHSPTAACVAR 320 
WD40-rpts       5_________________)                                    (____________________WD 

Query      321 GCSEGVSFTTCSEDGTIRLWDLAFQVNPLEANASSNPSESSTQGIMHLASAGIFERDLVETCGSKFGFRALAVSEDGKYL 400 
WD40-rpts      6___________________)                                 (_________________WD 7____

Query      401 AAGDCGGNLHIYDLQESEYTCFMDAHEAEIQSLSFSFPVLTNVDSENASSLLASGGKGRAIHIYDVKRNFDPVGSVCGSA 480 
WD40-rpts      ____________)   (______________________WD 8_____________________)   (___________

Query      481 AVTSVKFACNGRKMLTSGADRLQMFDVNRKASSVRLSPSHTQTLSHGTIYDVAVDPTSGLVVTVGQDKKINIFDIESGKL 560 
WD40-rpts      _____WD 9________________)          (________________WD10________________)   (__

Query      561 VRSFKQDRDHGDPVKVILDPSCNYLVCSYSNRTICFVDFVTGELVAQATGHGEAVTGVIFLPDCKHIISVASDGCIFVWK 640 
WD40-rpts      ________________WD11_________________)   (_________________WD12________________)

Query      641 LPLRMATRIIRAVNENGRLTVAQLEKFKQIAVDLEEDNPNDASCSANYKPVEENADQMQQRSPWTSSFKFSVSRLPKWAQ 720 
WD40-rpts         (__________________WD13_________________)                                    

Query      721 AKVETSDIATNCQDSISNQKHEDKSMANTIDNAEECSSVNLEYQTPKQGSRTENACLGSLSKSSNDTETSGLQGDDPSNR 800 
WD40-rpts                                                                                      

Query      801 KEKTRWNTIYNVCLDLLNTPNIQASFIKQQKPENFCTKHSAGQGDMFKQFDNSLSIIDNVEAEKSSQQRRYSSQFVLRRD 880 
WD40-rpts                    (______________WD14______________)                                

Query      881 YIGGTKQFTRTPSQKSGYKTLRSIQEHIPLDTVNDQSSHSSEEHPEQDKTSSEVFHDTLADESLQERITSCRQALHGLNT 960 
WD40-rpts                                                                                      

Query      961 AAAVFVQSISELSTASPRDQISGELRAQLFDEAALMIPDVSHKVSEIVAKIMLEHKNRTSDRMLSN 1026
WD40-rpts                                                                        

14 WD40-repeats found in QUERY=AT3G09080.1 (Len=1026):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    25-53       3.17  245.72  0.02998       17.5%     26.96
  WD 2:  Seg  4    57-97       6.65  389.29  0.00035       17.5%     56.82
  WD 3:  Seg  8   100-141      6.46  381.70  0.00045       25.0%     47.95
  WD 4:  Seg 14   175-213      5.96  360.79  0.00085        7.5%     49.36
  WD 5:  Seg 18   220-260      4.80  312.97  0.00377       15.0%     47.02
  WD 6:  Seg 25   297-341      6.96  402.20  0.00024       32.5%     46.03
  WD 7:  Seg 31   375-413      8.26  456.01  4.4e-05       27.5%     54.99
  WD 8:  Seg 35   417-465      6.97  402.57  0.00023       27.5%     56.67
  WD 9:  Seg 39   469-506      6.73  392.79  0.00032       20.0%     50.94
  WD10:  Seg 44   517-554      7.04  405.33  0.00021       17.5%     44.86
  WD11:  Seg 47   558-598      6.75  393.48  0.00031       22.5%     56.14
  WD12:  Seg 51   602-640      9.82  520.14  6.1e-06       42.5%     56.11
  WD13:  Seg 54   644-684      3.61  263.95  0.01713       12.5%     28.72
  WD14:  Seg 59   815-848      4.87  315.63  0.00347        7.5%     19.34

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   25-53     -----------TTKNA--NG--LASVTCS----------SKCVYLAGC-------VVVVYD
   WD 2   57-97     -C----TQSHLVVSHRMPKP--LSCVAIS----------QNGRFVAAGER---TRSSKVGS
   WD 3  100-141    -F----HGNQTDDGFQ--KG--NSFVSVI----------SANRVNSSGSDEQIDEVISIYA
   WD 4  175-213    -K----SFFEWLAMKC--QV--QKCFALS----------ASSRLIACACS---KGMVQLFT
   WD 5  220-260    -A----GTIQFSDAKS--SN--TENLSQS----------PEPKNIESSPG-IFPDAVACQF
   WD 6  297-341    AGIWDIKNLSCGNMHS--PT--AACVARG---------CSEGVSFTTCSE---DGTIRLWD
   WD 7  375-413    -E----RDLVETCGSK--FG--FRALAVS----------EDGKYLAAGDC---GGNLHIYD
   WD 8  417-465    -S----EYTCFMDAHE--AE--IQSLSFSFPVLTNVDSENASSLLASGGK---GRAIHIYD
   WD 9  469-506    -N----FDPVGSVCGS--AA--VTSVKFA----------CNGRKMLTSGA---D-RLQMFD
   WD10  517-554    ------SPSHTQTLSH--GT--IYDVAVD----------PTSGLVVTVGQ---DKKINIFD
   WD11  558-598    -G----KLVRSFKQDRDHGD--PVKVILD----------PSCNYLVCSYS---NRTICFVD
   WD12  602-640    -G----ELVAQATGHG--EA--VTGVIFL----------PDCKHIISVAS---DGCIFVWK
   WD13  644-684    -R----MATRIIRAVN--ENGRLTVAQLE----------KFKQIAVDLEE---DNPNDASC
   WD14  815-848    ----------DLLNTP--NI--QASFIKQ----------QKPENFCTKHS---AGQGDMFK

   WD40 Template    TG----ECLRTLSGHT--SG--VTSVSFS----------PDGKRLVSGSE---DGTIKVWD