Input parameters:

  Query = AT3G10530.1 (Len=536)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G10530.1, Len=536):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEISSEDNNLMEKVLPPVEQESDVELETKVKKYLRGEGANLETLKDKKLKTQLASREKLYGKSAKAAAKIEKWLLPAEAG 80  
WD40-rpts                                                                       (____________WD

Query       81 YLETEGLEKTWRVKQTDIANEVDILSSRNQYDIVLPDFGPYKLDFTASGRHMLAGGRKGHLALLDMMNMSLIKEIQVRET 160 
WD40-rpts       1____________)           (_________________WD 2________________)   (___________

Query      161 VRDVAFLHNDQFFAAAQKKYAYIYGRDGTELHCLKERGPVARLRFLKNHFLLASVNMSGQLHYQDVTHGGMVASIRTGKG 240 
WD40-rpts      _____WD 3_______________)(_________________WD 4_________________)   (___________

Query      241 RTDVMEVNPYNSVVGLGHSGGTVTMWKPTSQAPLVQMQCHPGPVSSVAFHPNGHLMATSGKERKIKIWDLRKFEEVQTIH 320 
WD40-rpts      ______WD 5________________)   (_________________WD 6________________)(__________

Query      321 SFHAKTLSFSQKGLLAAGTGSFVQILGDSSGGSSHNYTRYMNHSMVKGYQIEKVMFRPYEDVIGIGHSMGWSSILIPGSG 400 
WD40-rpts      _______WD 7________________)(_____________________WD 8_____________________)    

Query      401 EPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLDPSKIGAMRPSRRKEKPSRGEIEAEKEVAIEAAKSTELKNKTK 480 
WD40-rpts                                                                                      

Query      481 GRNKPSKRTKKKKEMVENAKRTFPEQEHNTAIKKRRIVEDAAAELPTSLKRFARKN 536 
WD40-rpts                                                              

8 WD40-repeats found in QUERY=AT3G10530.1 (Len=536):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    66-95       3.64  264.99  0.01659        7.5%     34.98
  WD 2:  Seg  4   107-145      6.61  387.67  0.00037       15.0%     53.60
  WD 3:  Seg  8   149-185      3.91  276.23  0.01173        7.5%     51.65
  WD 4:  Seg 12   186-225      6.88  398.96  0.00026       15.0%     56.48
  WD 5:  Seg 16   229-267      7.41  420.71  0.00013       15.0%     54.35
  WD 6:  Seg 20   271-309      9.13  491.73  1.5e-05       30.0%     52.78
  WD 7:  Seg 24   310-348      5.77  353.18  0.00108       20.0%     47.41
  WD 8:  Seg 28   349-396      5.15  327.60  0.00239       12.5%     46.80

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   66-95     ------------------AAAKIEKWLLPAEAGYLETEGLEKTWRVKQ
   WD 2  107-145    -S--------RNQYDIVLPDFGPYKLDFTASGRHMLAGGRKGHLALLD
   WD 3  149-185    -M--------SLIKEIQVRET-VRDVAFLHNDQFFAAAQ-KKYAYIYG
   WD 4  186-225    RD--------GTELHCLKERGPVARLRFLKNHFLLASVNMSGQLHYQD
   WD 5  229-267    -G--------GMVASIRTGKGRTDVMEVNPYNSVVGLGHSGGTVTMWK
   WD 6  271-309    -Q--------APLVQMQCHPGPVSSVAFHPNGHLMATSGKERKIKIWD
   WD 7  310-348    LR--------KFEEVQTIHSFHAKTLSFSQKG-LLAAGTGSFVQILGD
   WD 8  349-396    SSGGSSHNYTRYMNHSMVKGYQIEKVMFRPYEDVIGIGHSMGWSSILI

   WD40 Template    TG--------ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD