Input parameters:

  Query = AT3G13340.1 (Len=447)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G13340.1, Len=447):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSNYRGDDAEYMEDVDDEMEDVEDDMDEEFRGDDLGASDSDVEEFDYSNNKVADTTAEQARKGKDIQGIPWDRLNISREK 80  
WD40-rpts                                                                                      

Query       81 YRQTRLEQYKNYENVPNSGESSEKVCKVTQKGGLFYDFWRNSRSIKSTILHFQLRNLVWATSKHDVYLMSNFLVTHYSSL 160 
WD40-rpts                                                                                      

Query      161 TSGKHEVLNVRGHVAPSEKHPGSLLEGFTQTQVSTLAVKDDFLVAGGFQGELICKHLDRPGVSFCSRMTYDDNAITNAIE 240 
WD40-rpts                                                                   (__________________

Query      241 IYNKPSGALHFTASNNDCGVRDFDMERYQLVKHFRFPWPVNHASLSPDGKLLAIVGDNPEGLIVDPNTGKTLETLSGHLD 320 
WD40-rpts      _WD 1__________________)(__________________WD 2_________________)   (___________

Query      321 FSFASAWHPDGVTFSTGNQDKTCRVWDIRNLSQSVTVLKGNLGAIRSIRYTSDGKYMAMAEPADFVHVYDVSNGYETEQE 400 
WD40-rpts      ______WD 3________________)    (_________________WD 4________________)   (______

Query      401 IDFFGEISGISFSPDTEALFIGVWDRTYGSLLEFGRRRNYSYLDSYL 447 
WD40-rpts      ___________WD 5_________________)              

5 WD40-repeats found in QUERY=AT3G13340.1 (Len=447):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   222-264      4.87  315.71  0.00346       12.5%     55.27
  WD 2:  Seg 12   265-305      7.12  408.73  0.00019       25.0%     56.80
  WD 3:  Seg 16   309-347     10.33  541.48  3.1e-06       40.0%     53.06
  WD 4:  Seg 20   352-390      8.79  477.71  2.3e-05       20.0%     52.03
  WD 5:  Seg 24   394-433      7.12  408.89  0.00019       25.0%     50.93

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  222-264    -VSF-CSRMTYDDNAITNAIEIYNKPSGALHFTASNNDCGV-RDFD
   WD 2  265-305    MERYQLVKHFRFPWPVN---HASLSPDGK-LLAIVGDNPEG-LIVD
   WD 3  309-347    -GKT-LETLSGHLDFSF---ASAWHPDGV-TFSTGNQDKTC-RVWD
   WD 4  352-390    -SQS-VTVLKGNLGAIR---SIRYTSDGK-YMAMAEPADFV-HVYD
   WD 5  394-433    -GYE-TEQEIDFFGEIS---GISFSPDTE-ALFIGVWDRTYGSLLE

   WD40 Template    TGEC-LRTLSGHTSGVT---SVSFSPDGK-RLVSGSEDGTI-KVWD