Input parameters:

  Query = AT3G15354.1 (Len=837)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G15354.1, Len=837):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEGSSNSNSRGFNTSGVSDRNTEFLPVERLTTRSKPSSHVDEYVRSLFGSTSTHKSGEDDSLGIDPFVRSLEWGDVSLRQ 80  
WD40-rpts                                                                                      

Query       81 WLDKPERSVDVFECLHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSLEDGPISQKEIGSS 160 
WD40-rpts                                                                                      

Query      161 RREEAVSKAIAIEEKGVYNKLLERKIEKLEEEKTQPFPMKHILAMETSWYTSPEEDFGSSSTCASDVYRLGVLLFELFCP 240 
WD40-rpts                                                                                      

Query      241 VPSREEKSRTMSSLRHRVLPPQILLKCPKEASFCLWLLHPEPTCRPSMSDLLQSEFITEPRDNLEEREAAIELRDRIEEQ 320 
WD40-rpts                                                                                      

Query      321 ESLLEFLLLIQQRKQESAYRLQDTVSLLSSDIEQVVKRQLILKKRGSSLSDFSKDDHQYTSGQPLMSFQANEEPSAFLAS 400 
WD40-rpts                                                                                      

Query      401 RKRVRQGILALENGVEVDEESQGSTLLESSRLMRNFKKLESVYFLTRRRQMKAAASGKSLTRHSPLSSENGRGSMIVSEK 480 
WD40-rpts                                                      (_______________WD 1____________

Query      481 SSVSNPVAPKAFFNNDSRQGGWIDPFLEGLCRYLSFSQLRVKADLKQGDLLNSSNLVCALAFDREGELFATAGVNKKIKI 560 
WD40-rpts      __)                                        (_________________WD 2_______________

Query      561 FECNSIVNDNRDIHYPVVELAGRSKLSSLCWNSYIKSQIASSNFDGVVQIWDVARSQLVTEMKEHKKRVWSIDISSADPT 640 
WD40-rpts      _)           (_________________WD 3________________)   (__________________WD 4__

Query      641 LLASGSDDGTGVSIGTIKTKANVCCVQFPSDSGRSLAFGSADHKVYYYDLRNPKIPLCTMIGHSKTVSYVKFVDSSTLVS 720 
WD40-rpts      _______________) (_____________WD 5_____________)(__________________WD 6________

Query      721 SSTDNTLKLWDLSMSASGINESPLHSFTGHTNLKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVMSYMFNNTDSMSGL 800 
WD40-rpts      __________)         (_________________WD 7________________)                (____

Query      801 EVDDASQFISSICWRGQSSTLVAANSNGNIKILEMMT 837 
WD40-rpts      _____________WD 8________________)   

8 WD40-repeats found in QUERY=AT3G15354.1 (Len=837):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   449-483      2.96  236.78  0.03938       20.0%     -5.25
  WD 2:  Seg  6   524-562      7.74  434.35  8.7e-05       15.0%     52.63
  WD 3:  Seg 10   574-612      7.36  418.62  0.00014       20.0%     52.80
  WD 4:  Seg 14   616-656      6.38  378.26  0.00050       30.0%     50.57
  WD 5:  Seg 18   658-689      4.72  309.53  0.00419       25.0%     45.32
  WD 6:  Seg 21   690-731      7.92  441.82  6.9e-05       42.5%     42.09
  WD 7:  Seg 24   741-779      7.85  438.86  7.6e-05       25.0%     51.29
  WD 8:  Seg 28   796-834      6.35  377.11  0.00051       15.0%     46.22

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  449-483    --------RQMKAAASGKSLTRHS-PL-SSENGRGSMIVS-EKSSV
   WD 2  524-562    -DL---KQGDLLNSSNLVCALAFD-RE-GELFATAGVNKK-IKIFE
   WD 3  574-612    -HY---PVVELAGRSKLSSLCWNS-YI-KSQIASSNFDGV-VQIWD
   WD 4  616-656    -SQ---LVTEMKEHKKRVWSIDISSAD-PTLLASGSDDGTGVSIGT
   WD 5  658-689    KTK------------ANVCCVQFP-SDSGRSLAFGSADHK-VYYYD
   WD 6  690-731    LRNPKIPLCTMIGHSKTVSYVKFV--D-SSTLVSSSTDNT-LKLWD
   WD 7  741-779    -ES---PLHSFTGHTNLKNFVGLS-VS-DGYIATGSETNE-VFVYH
   WD 8  796-834    -SM---SGLEVDDASQFISSICWR-GQ-SSTLVAANSNGN-IKILE

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFS-PD-GKRLVSGSEDGT-IKVWD