Input parameters:

  Query = AT3G15470.1 (Len=883)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G15470.1, Len=883):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSYQNEEEEEGGDTNDCFYESLDRLASSSSCSCSASNSDYDSESSPRISSAASHDSEELYGGGRRRRYPFPVPRFPMGAS 80  
WD40-rpts                                                                                      

Query       81 KFDVWTSEPASVSERRSKLLNEMGLSRDPVLSRLKPVSDSSSSKDTGAAGFEISRSISCNQLARRDHGECSESVGGCASC 160 
WD40-rpts                                                                                      

Query      161 IVRSKSDITTSQCGDRDRRYTSPGNPCSCSVSKLSVHHSSHSEISRTSSPFVNCSVGSVSADSLRLNGDSDCVLRESVVN 240 
WD40-rpts                                                                                      

Query      241 EEVEVCTIKNLDNGKEFVVNEIQEDGTWKKVKEVGTGTQMTMEEFEMCVGHSPIVQELMRRQNVEDSDKNTSKENEDSGN 320 
WD40-rpts                (_______________________WD 1_______________________)_______________WD 

Query      321 SNKDNASKSKKKGSWFKSIKSVASSMTGHSKERRSSDDRDTSSERGGRRSSSATDDSQESSFHGPERVRVRQYGKSSKEL 400 
WD40-rpts      2______________)                  (_________________WD 3_________________)(_____

Query      401 TALYKTQEIQAHNGSIWSIKFSLDGKYLASAGEDCIIHIWQVVEAEKKGELLLDRPELLLLATNGSPEPTTMSPRRRGRT 480 
WD40-rpts      ________________WD 4____________________)(______________________WD 5____________

Query      481 SISRKSLSLENIFVPDSLFGLSEKPFCSFQGHVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSDYVTCIQ 560 
WD40-rpts      __________)           (________________WD 6________________)  (_________________

Query      561 FNPVDDRYFISGSLDAKVRVWSIPDRQVVDWYDLHEMVTSACYTPDGQGVLVGSYKGSCRMYSASDNKLQQKSQINLQNK 640 
WD40-rpts      WD 7_________________)   (________________WD 8________________)(________________

Query      641 KKKAHQKKITGFQFVPGSSSEVLVTSSDSRIRVVDGTDLVNKLKGFRNTSSQISASITADGKYVVSASEDSHVYIWKYES 720 
WD40-rpts      _______WD 9_______________________)(__________________WD10__________________)   

Query      721 PASRPSRSNNNKNVTVTNSYEHFHSQDVSAAISWPGMASTENWGTQNRAGFNGSTNNLDNISTANHPPTPVDQLGTVERL 800 
WD40-rpts      (___________________WD11___________________)                              (_____

Query      801 NSPRNGIISSATNGYFFDRMSATWPEEKLLFARNRSGNRLSTDMSSSNGNSGNVSASWGMVIVTAGLRGEIRTFQNFGLP 880 
WD40-rpts      ____________WD12_________________)  (_________________WD13________________)     

Query      881 IRI 883 
WD40-rpts         

13 WD40-repeats found in QUERY=AT3G15470.1 (Len=883):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   251-302      4.33  293.46  0.00689        7.5%     31.05
  WD 2:  Seg  5   302-336      5.68  349.42  0.00122        5.0%      9.67
  WD 3:  Seg  8   355-394      5.43  339.06  0.00168       12.5%     24.47
  WD 4:  Seg 10   395-441      8.85  480.41  2.1e-05       32.5%     47.11
  WD 5:  Seg 13   442-491      4.20  288.03  0.00815       10.0%     29.64
  WD 6:  Seg 16   503-540      7.01  404.38  0.00022       25.0%     48.14
  WD 7:  Seg 20   543-582      7.66  431.06  9.6e-05       30.0%     52.89
  WD 8:  Seg 24   586-623      6.99  403.55  0.00023       25.0%     58.47
  WD 9:  Seg 28   624-675      6.57  385.92  0.00039       22.5%     51.38
  WD10:  Seg 32   676-717      8.65  472.07  2.7e-05       37.5%     52.77
  WD11:  Seg 36   721-764      5.48  341.14  0.00157       17.5%     31.62
  WD12:  Seg 40   795-834      4.05  282.15  0.00978       15.0%     32.80
  WD13:  Seg 44   837-875      7.62  429.57  0.00010       20.0%     53.17

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  251-302    LDNGKE-------FVV----NEIQ-----------EDGTWKKVK-----EVG-TG-TQ-MTMEEF------EMCVGHSPIVQELMRRQ
   WD 2  302-336    ---------------Q----NVED-----------SDKNTSKEN-----EDS-GN-SN-KDNASK------SKKKGSW---------F
   WD 3  355-394    SS---D-------DRD----TSSE-----------RGGRRSSSA-----TDD-SQ-ES-SFHGPE------RVRVRQY---------G
   WD 4  395-441    KS---SKELTALYKTQ----EIQA-----------HNGSIWSIK-----FSL-DG-KY-LASAGE------DCIIHIW---------Q
   WD 5  442-491    VV---E-------AEKKGELLLDR-----------PELLLLATN-----GSP-EP-TT-MSPRRRGRTSISRKSLSLE---------N
   WD 6  503-540    -E---K-------PFC----SFQG-----------HVDDVLDLA-----WSK-SQ--H-LLSSSM------DKTVRLW---------N
   WD 7  543-582    -S---Q-------TCL----KVFS-----------HSDYVTCIQ-----FNPVDD-RY-FISGSL------DAKVRVW---------S
   WD 8  586-623    -R---Q-------VVD----WYDL-----------HEM-VTSAC-----YTP-DG-QG-VLVGSY------KGSCRMY---------S
   WD 9  624-675    AS---D-------NKL----QQKSQINLQNKKKKAHQKKITGFQ-----FVP-GSSSE-VLVTSS------DSRIRVV---------D
   WD10  676-717    GT---D-------LVN----KLKG---------FRNTSSQISAS-----ITA-DG-KY-VVSASE------DSHVYIW---------K
   WD11  721-764    -P---A-------SRP----SRSN-----------NNKNVTVTNSYEHFHSQ-DV-SA-AISWPG------MASTENW---------G
   WD12  795-834    -G---T-------VER----LNSP-----------RNGIISSAT-----NGY-FF-DRMSATWPE------EKLLFAR---------N
   WD13  837-875    -G---N-------RLS----TDMS-----------SSNGNSGNV-----SAS-WG-MV-IVTAGL------RGEIRTF---------Q

   WD40 Template    TG---E-------CLR----TLSG-----------HTSGVTSVS-----FSP-DG-KR-LVSGSE------DGTIKVW---------D